PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001245
Description: Serine-threonine/tyrosine-protein kinase catalytic domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00029	13	CH_atr_243	8	34	0.0000038328
Arabidopsis thaliana	1	13	CH_ath_334	7	20	0.0000278997
Arabidopsis thaliana	5	13	CH_ath_586	5	10	0.000939226
Beta vulgaris	Bvchr8.sca018	13	CH_bvu_521	4	5	0.000995745
Brassica rapa	A07	13	CH_bra_266	6	9	0.0000201007
Capsella rubella	scaffold_2	13	CH_cru_72	12	20	0.000000000000151648
Capsella rubella	scaffold_5	13	CH_cru_176	8	12	0.0000000176985
Capsella rubella	scaffold_2	14	CH_cru_29	12	20	0.000000000000151648
Capsella rubella	scaffold_2	14	CH_cru_38	10	24	0.0000000117013
Carica papaya	supercontig_3	13	CH_cpa_158	5	6	0.00000756143
Cucumis melo	CM3.5_scaffold00001	13	CH_cme_185	5	5	0.0000016735
Eucalyptus grandis	scaffold_5	13	CH_egr_329	10	10	0.00000000000056874
Eucalyptus grandis	scaffold_7	13	CH_egr_808	6	6	0.00000297732
Eucalyptus grandis	scaffold_8	13	CH_egr_626	8	10	0.0000000565542
Eucalyptus grandis	scaffold_10	14	CH_egr_190	31	228	0.00000000000756699
Eucalyptus grandis	scaffold_5	14	CH_egr_182	10	10	0.00000000000056874
Fragaria vesca	LG3	13	CH_fve_618	5	9	0.00041932
Fragaria vesca	LG7	13	CH_fve_456	5	7	0.0000710663
Glycine max	Gm18	13	CH_gma_56	18	44	3.72871e-17
Glycine max	Gm18	14	CH_gma_32	18	44	3.72871e-17
Gossypium raimondii	Chr07	13	CH_gra_326	6	8	0.00000525221
Malus domestica	2	13	CH_mdo_551	4	4	0.000515422
Manihot esculenta	scaffold07351	13	CH_mes_116	7	10	0.000000233749
Medicago truncatula	chr3	13	CH_mtr_844	5	7	0.0000636881
Medicago truncatula	chr4	13	CH_mtr_651	5	5	0.00000307659
Medicago truncatula	chr8	14	CH_mtr_113	15	64	0.000000000000667293
Oryza sativa ssp. japonica	11	13	CH_osa_315	8	21	0.000000151663
Oryza sativa ssp. japonica	11	14	CH_osa_112	12	103	0.00000235148
Populus trichocarpa	Chr04	13	CH_ptr_39	25	52	3.01652e-26
Populus trichocarpa	Chr04	14	CH_ptr_39	25	52	3.01652e-26
Solanum tuberosum	chr02	13	CH_stu_59	25	76	4.97526e-24
Solanum tuberosum	chr07	14	CH_stu_142	18	227	0.0000441401
Theobroma cacao	scaffold_5	13	CH_tca_234	7	9	0.0000000743851
Theobroma cacao	scaffold_5	14	CH_tca_73	11	89	0.000886035
Vitis vinifera	chr10	13	CH_vvi_568	6	12	0.000246442
Vitis vinifera	chrUn	13	CH_vvi_586	10	58	0.000368081
Vitis vinifera	chrUn	14	CH_vvi_85	22	292	0.0000180161

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V