PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr2	13	CH_cla_222	5	6	0.0000165349
Cucumis melo	CM3.5_scaffold00017	13	CH_cme_214	6	16	0.0000137569
Fragaria vesca	LG6	13	CH_fve_180	7	10	0.00000000680355
Gossypium raimondii	Chr01	13	CH_gra_599	4	4	0.000827997
Malus domestica	8	13	CH_mdo_170	5	5	0.000000866107
Oryza sativa ssp. japonica	6	13	CH_osa_579	5	10	0.0000596802
Populus trichocarpa	Chr18	13	CH_ptr_693	5	8	0.000337781
Prunus persica	scaffold_1	13	CH_ppe_220	7	8	0.00000000122021
Theobroma cacao	scaffold_9	13	CH_tca_278	6	8	0.000000405813
Zea mays	1	13	CH_zma_411	5	8	0.000177828

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V