PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	13	CH_atr_457	3	4	0.000461991
Amborella trichopoda	scaffold00049	13	CH_atr_132	5	7	0.00000000590202
Brassica rapa	A05	13	CH_bra_161	4	5	0.000000672491
Citrullus lanatus	Chr3	13	CH_cla_337	3	3	0.00016496
Citrullus lanatus	Chr9	13	CH_cla_162	4	4	0.000000301894
Eucalyptus grandis	scaffold_10	13	CH_egr_1038	4	9	0.0000813942
Eucalyptus grandis	scaffold_4	13	CH_egr_1037	4	9	0.0000813942
Eucalyptus grandis	scaffold_5	13	CH_egr_369	7	12	0.0000000000040097
Eucalyptus grandis	scaffold_9	13	CH_egr_342	8	20	0.00000000000121514
Fragaria vesca	LG1	13	CH_fve_631	3	5	0.000530462
Lotus japonicus	chr1	13	CH_lja_276	4	32	0.000481558
Medicago truncatula	chr1	13	CH_mtr_731	4	11	0.0000129478
Prunus persica	scaffold_8	13	CH_ppe_425	4	7	0.00000698905
Ricinus communis	29830	13	CH_rco_133	5	9	0.000000050316
Solanum lycopersicum	ch07	13	CH_sly_291	4	4	0.000000295702

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V