PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000823
Description: Plant peroxidase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00029	13	CH_atr_4	18	18	5.26546e-42
Amborella trichopoda	scaffold00057	13	CH_atr_540	3	3	0.000829838
Amborella trichopoda	scaffold00077	13	CH_atr_100	6	7	0.000000000169708
Amborella trichopoda	scaffold00083	13	CH_atr_383	5	22	0.000201312
Amborella trichopoda	scaffold00029	14	CH_atr_4	18	18	5.26546e-42
Beta vulgaris	Bvchr2.sca001	13	CH_bvu_80	7	12	0.000000000119862
Beta vulgaris	Bvchr7.sca021	13	CH_bvu_14	13	34	1.60727e-19
Beta vulgaris	Bvchr7.sca021	14	CH_bvu_8	13	34	1.60727e-19
Capsella rubella	scaffold_7	13	CH_cru_261	4	4	0.00000190286
Capsella rubella	scaffold_7	13	CH_cru_344	4	6	0.0000284119
Carica papaya	supercontig_119	13	CH_cpa_109	4	4	0.000000409055
Eucalyptus grandis	scaffold_1	13	CH_egr_384	6	6	0.00000000000720448
Eucalyptus grandis	scaffold_1	13	CH_egr_1229	3	3	0.000524047
Eucalyptus grandis	scaffold_8	13	CH_egr_772	4	4	0.00000127073
Glycine max	Gm03	13	CH_gma_55	10	15	2.91164e-17
Glycine max	Gm09	13	CH_gma_117	7	8	0.00000000000219761
Glycine max	Gm03	14	CH_gma_31	10	15	2.91164e-17
Malus domestica	17	13	CH_mdo_430	3	3	0.000224677
Medicago truncatula	chr1	13	CH_mtr_1168	4	13	0.000573318
Medicago truncatula	chr5	13	CH_mtr_344	7	26	0.00000000315512
Oryza sativa ssp. japonica	1	13	CH_osa_174	7	14	0.000000000133217
Oryza sativa ssp. japonica	6	13	CH_osa_303	6	15	0.0000000774542
Oryza sativa ssp. japonica	7	13	CH_osa_282	5	6	0.0000000375537
Oryza sativa ssp. japonica	1	14	CH_osa_108	12	275	0.000000586083
Physcomitrella patens	scaffold_256	13	CH_ppa_129	4	16	0.000529276
Populus trichocarpa	Chr03	13	CH_ptr_157	6	6	0.00000000000821905
Populus trichocarpa	Chr07	13	CH_ptr_398	4	4	0.00000145317
Populus trichocarpa	Chr17	13	CH_ptr_743	3	3	0.000601598
Prunus persica	scaffold_6	13	CH_ppe_658	3	3	0.000390637
Prunus persica	scaffold_6	13	CH_ppe_164	6	7	0.0000000000334999
Ricinus communis	29726	13	CH_rco_384	3	3	0.000547066
Solanum lycopersicum	ch01	13	CH_sly_359	4	4	0.00000292419
Solanum lycopersicum	ch03	13	CH_sly_812	3	3	0.00098008
Solanum lycopersicum	ch05	13	CH_sly_813	3	3	0.00098008
Solanum tuberosum	chr01	13	CH_stu_378	5	5	0.0000000132034
Theobroma cacao	scaffold_10r	13	CH_tca_558	4	10	0.000281242
Theobroma cacao	scaffold_9	13	CH_tca_252	5	8	0.000000190326
Vitis vinifera	chr1	13	CH_vvi_86	8	10	0.0000000000000028975
Vitis vinifera	chr1	14	CH_vvi_63	10	77	0.0000000003709
Zea mays	10	13	CH_zma_8	13	18	2.41462e-24
Zea mays	10	14	CH_zma_6	13	18	2.41462e-24

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V