Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR000743
- Description
- Glycoside hydrolase, family 28
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00019 | 13 | CH_atr_210 | 6 | 35 | 0.000000569867 |
Amborella trichopoda | scaffold00104 | 13 | CH_atr_456 | 3 | 4 | 0.000429772 |
Beta vulgaris | Bvchr6.sca027 | 13 | CH_bvu_424 | 3 | 4 | 0.000398975 |
Carica papaya | supercontig_136 | 13 | CH_cpa_205 | 3 | 3 | 0.0000846033 |
Citrullus lanatus | Chr0 | 13 | CH_cla_205 | 4 | 5 | 0.00000624938 |
Citrullus lanatus | Chr2 | 13 | CH_cla_47 | 7 | 7 | 0.0000000000000208569 |
Citrus sinensis | scaffold00011 | 13 | CH_csi_130 | 4 | 4 | 0.000000472026 |
Citrus sinensis | scaffold00180 | 13 | CH_csi_47 | 7 | 13 | 0.00000000000725955 |
Citrus sinensis | scaffold00396 | 13 | CH_csi_171 | 5 | 17 | 0.00000612576 |
Cucumis melo | CM3.5_scaffold00066 | 13 | CH_cme_488 | 3 | 4 | 0.000775854 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_1125 | 3 | 3 | 0.000184292 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_339 | 6 | 6 | 0.00000000000085085 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_1126 | 3 | 3 | 0.000184292 |
Gossypium raimondii | Chr11 | 13 | CH_gra_502 | 3 | 3 | 0.000224355 |
Malus domestica | 15 | 13 | CH_mdo_287 | 4 | 11 | 0.0000329845 |
Malus domestica | 16 | 13 | CH_mdo_337 | 3 | 3 | 0.0000838465 |
Malus domestica | 6 | 13 | CH_mdo_486 | 3 | 4 | 0.000335076 |
Manihot esculenta | scaffold00341 | 13 | CH_mes_216 | 4 | 8 | 0.000026585 |
Manihot esculenta | scaffold04269 | 13 | CH_mes_56 | 5 | 5 | 0.000000000743819 |
Medicago truncatula | chr8 | 14 | CH_mtr_137 | 10 | 202 | 0.00000000387818 |
Oryza sativa ssp. japonica | 6 | 13 | CH_osa_844 | 3 | 7 | 0.000946314 |
Populus trichocarpa | Chr17 | 13 | CH_ptr_55 | 12 | 33 | 1.92481e-20 |
Populus trichocarpa | Chr17 | 14 | CH_ptr_54 | 12 | 33 | 1.92481e-20 |
Prunus persica | scaffold_1 | 13 | CH_ppe_647 | 3 | 3 | 0.000309534 |
Prunus persica | scaffold_3 | 13 | CH_ppe_349 | 5 | 11 | 0.000000650765 |
Prunus persica | scaffold_6 | 13 | CH_ppe_648 | 3 | 3 | 0.000309534 |
Ricinus communis | 30042 | 13 | CH_rco_7 | 11 | 11 | 5.45925e-27 |
Ricinus communis | 30042 | 14 | CH_rco_7 | 11 | 11 | 5.45925e-27 |
Solanum tuberosum | chr01 | 13 | CH_stu_193 | 6 | 6 | 0.000000000000544824 |
Thellungiella parvula | ch7-5 | 13 | CH_tpa_274 | 3 | 3 | 0.00032418 |
Vitis vinifera | chr13 | 13 | CH_vvi_359 | 4 | 5 | 0.0000033248 |
Zea mays | 6 | 13 | CH_zma_5 | 14 | 16 | 9.75902e-35 |
Zea mays | 6 | 14 | CH_zma_5 | 14 | 16 | 9.75902e-35 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |