Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR000726
- Description
- Glycoside hydrolase, family 19, catalytic
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00001 | 13 | CH_atr_34 | 7 | 12 | 2.60709e-17 |
Arabidopsis lyrata | scaffold_4 | 13 | CH_aly_25 | 8 | 12 | 4.01197e-21 |
Citrullus lanatus | Chr1 | 13 | CH_cla_33 | 6 | 6 | 4.6452e-17 |
Citrus sinensis | scaffold00023 | 13 | CH_csi_122 | 3 | 3 | 0.000000402413 |
Cucumis melo | CM3.5_scaffold00007 | 13 | CH_cme_35 | 6 | 6 | 2.73281e-17 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_67 | 10 | 10 | 2.99006e-28 |
Eucalyptus grandis | scaffold_9 | 13 | CH_egr_438 | 6 | 19 | 0.000000000095063 |
Eucalyptus grandis | scaffold_8 | 14 | CH_egr_67 | 10 | 10 | 2.99006e-28 |
Fragaria vesca | scf0513070 | 13 | CH_fve_398 | 3 | 8 | 0.0000496435 |
Gossypium raimondii | Chr05 | 13 | CH_gra_306 | 3 | 3 | 0.00000291181 |
Gossypium raimondii | Chr06 | 13 | CH_gra_191 | 4 | 5 | 0.00000000544373 |
Malus domestica | 2 | 13 | CH_mdo_202 | 3 | 4 | 0.00000153385 |
Medicago truncatula | chr2 | 13 | CH_mtr_588 | 3 | 4 | 0.00000124223 |
Populus trichocarpa | Chr09 | 13 | CH_ptr_97 | 6 | 7 | 0.00000000000000130911 |
Prunus persica | scaffold_1 | 13 | CH_ppe_275 | 5 | 29 | 0.0000000478032 |
Solanum lycopersicum | ch02 | 13 | CH_sly_480 | 3 | 5 | 0.0000562466 |
Solanum lycopersicum | ch10 | 13 | CH_sly_74 | 7 | 14 | 7.45777e-16 |
Solanum lycopersicum | ch10 | 14 | CH_sly_45 | 11 | 72 | 0.000000000000013201 |
Solanum tuberosum | chr02 | 13 | CH_stu_582 | 3 | 5 | 0.00000408273 |
Thellungiella parvula | ch4-6 | 13 | CH_tpa_35 | 5 | 9 | 0.0000000000298252 |
Theobroma cacao | scaffold_4 | 13 | CH_tca_181 | 4 | 6 | 0.00000000470299 |
Vitis vinifera | chr5 | 13 | CH_vvi_32 | 9 | 13 | 7.42205e-25 |
Vitis vinifera | chr5 | 14 | CH_vvi_50 | 10 | 204 | 0.00000000000000418138 |
Vitis vinifera | chr5 | 15 | CH_vvi_14 | 2 | 2 | 0.000752106 |
Zea mays | 2 | 13 | CH_zma_84 | 4 | 4 | 0.0000000014792 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |