PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00001	13	CH_atr_34	7	12	2.60709e-17
Arabidopsis lyrata	scaffold_4	13	CH_aly_25	8	12	4.01197e-21
Citrullus lanatus	Chr1	13	CH_cla_33	6	6	4.6452e-17
Citrus sinensis	scaffold00023	13	CH_csi_122	3	3	0.000000402413
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_35	6	6	2.73281e-17
Eucalyptus grandis	scaffold_8	13	CH_egr_67	10	10	2.99006e-28
Eucalyptus grandis	scaffold_9	13	CH_egr_438	6	19	0.000000000095063
Eucalyptus grandis	scaffold_8	14	CH_egr_67	10	10	2.99006e-28
Fragaria vesca	scf0513070	13	CH_fve_398	3	8	0.0000496435
Gossypium raimondii	Chr05	13	CH_gra_306	3	3	0.00000291181
Gossypium raimondii	Chr06	13	CH_gra_191	4	5	0.00000000544373
Malus domestica	2	13	CH_mdo_202	3	4	0.00000153385
Medicago truncatula	chr2	13	CH_mtr_588	3	4	0.00000124223
Populus trichocarpa	Chr09	13	CH_ptr_97	6	7	0.00000000000000130911
Prunus persica	scaffold_1	13	CH_ppe_275	5	29	0.0000000478032
Solanum lycopersicum	ch02	13	CH_sly_480	3	5	0.0000562466
Solanum lycopersicum	ch10	13	CH_sly_74	7	14	7.45777e-16
Solanum lycopersicum	ch10	14	CH_sly_45	11	72	0.000000000000013201
Solanum tuberosum	chr02	13	CH_stu_582	3	5	0.00000408273
Thellungiella parvula	ch4-6	13	CH_tpa_35	5	9	0.0000000000298252
Theobroma cacao	scaffold_4	13	CH_tca_181	4	6	0.00000000470299
Vitis vinifera	chr5	13	CH_vvi_32	9	13	7.42205e-25
Vitis vinifera	chr5	14	CH_vvi_50	10	204	0.00000000000000418138
Vitis vinifera	chr5	15	CH_vvi_14	2	2	0.000752106
Zea mays	2	13	CH_zma_84	4	4	0.0000000014792

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V