PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000719
Description: Protein kinase domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00019	13	CH_atr_126	10	14	0.00000000286553
Amborella trichopoda	scaffold00022	13	CH_atr_377	10	33	0.000169851
Amborella trichopoda	scaffold00056	13	CH_atr_249	9	18	0.00000486421
Amborella trichopoda	scaffold00019	14	CH_atr_35	10	14	0.00000000286553
Amborella trichopoda	scaffold00056	14	CH_atr_42	15	77	0.0000264431
Arabidopsis lyrata	scaffold_5	13	CH_aly_223	8	9	0.000000402004
Arabidopsis lyrata	scaffold_5	14	CH_aly_43	10	23	0.0000385789
Arabidopsis thaliana	3	13	CH_ath_204	8	9	0.000000243112
Arabidopsis thaliana	3	14	CH_ath_42	10	23	0.0000207769
Brassica rapa	A09	13	CH_bra_310	7	8	0.0000574492
Capsella rubella	scaffold_2	13	CH_cru_77	14	17	0.000000000000596632
Capsella rubella	scaffold_5	13	CH_cru_260	8	9	0.00000184507
Capsella rubella	scaffold_2	14	CH_cru_30	14	17	0.000000000000596632
Chlamydomonas reinhardtii	chromosome_2	13	CH_cre_111	7	10	0.000136207
Citrus sinensis	scaffold00037	13	CH_csi_344	8	14	0.000646917
Citrus sinensis	scaffold00103	13	CH_csi_151	8	9	0.00000237162
Citrus sinensis	scaffold00103	14	CH_csi_20	11	27	0.000161181
Eucalyptus grandis	scaffold_1	13	CH_egr_855	9	10	0.00000631431
Eucalyptus grandis	scaffold_10	13	CH_egr_613	19	41	0.0000000499964
Eucalyptus grandis	scaffold_11	13	CH_egr_582	14	20	0.0000000198596
Eucalyptus grandis	scaffold_11	13	CH_egr_477	16	23	0.000000000486652
Eucalyptus grandis	scaffold_11	13	CH_egr_322	22	36	0.000000000000336765
Eucalyptus grandis	scaffold_2	13	CH_egr_244	17	18	0.00000000000000333816
Eucalyptus grandis	scaffold_2	13	CH_egr_561	19	38	0.00000000871906
Eucalyptus grandis	scaffold_7	13	CH_egr_1040	8	9	0.0000881892
Eucalyptus grandis	scaffold_7	13	CH_egr_664	19	43	0.000000144287
Eucalyptus grandis	scaffold_1	14	CH_egr_222	10	10	0.0000000432098
Eucalyptus grandis	scaffold_11	14	CH_egr_219	14	20	0.0000000198596
Eucalyptus grandis	scaffold_2	14	CH_egr_155	17	18	0.00000000000000333816
Eucalyptus grandis	scaffold_2	14	CH_egr_215	19	38	0.00000000871906
Eucalyptus grandis	scaffold_6	14	CH_egr_242	10	12	0.00000252746
Eucalyptus grandis	scaffold_7	14	CH_egr_225	19	43	0.000000144287
Fragaria vesca	LG3	13	CH_fve_375	9	18	0.0000231275
Fragaria vesca	LG3	14	CH_fve_62	15	83	0.000731215
Glycine max	Gm20	13	CH_gma_170	14	20	0.000000000157175
Gossypium raimondii	Chr06	13	CH_gra_47	27	48	6.04666e-20
Gossypium raimondii	Chr02	14	CH_gra_32	56	205	2.39399e-24
Gossypium raimondii	Chr06	14	CH_gra_41	27	48	6.04666e-20
Malus domestica	12	13	CH_mdo_590	11	39	0.000772042
Malus domestica	5	13	CH_mdo_426	13	52	0.000198298
Malus domestica	12	14	CH_mdo_37	11	39	0.000772042
Malus domestica	5	14	CH_mdo_29	13	52	0.000198298
Manihot esculenta	scaffold04324	13	CH_mes_12	19	21	3.38326e-20
Manihot esculenta	scaffold12004	13	CH_mes_223	7	8	0.0000417831
Manihot esculenta	scaffold04324	14	CH_mes_9	19	21	3.38326e-20
Manihot esculenta	scaffold07351	14	CH_mes_12	10	19	0.0000269042
Medicago truncatula	chr2	13	CH_mtr_1241	9	28	0.000979695
Medicago truncatula	chr2	13	CH_mtr_1103	6	8	0.000391762
Medicago truncatula	chr6	13	CH_mtr_427	16	59	0.0000000463659
Medicago truncatula	chr7	13	CH_mtr_349	19	80	0.00000000464669
Medicago truncatula	chr6	14	CH_mtr_142	16	59	0.0000000463659
Medicago truncatula	chr7	14	CH_mtr_130	21	94	0.000000000851631
Oryza sativa ssp. japonica	11	13	CH_osa_522	13	49	0.0000287892
Oryza sativa ssp. japonica	11	13	CH_osa_66	22	49	5.51895e-17
Oryza sativa ssp. japonica	11	14	CH_osa_55	22	49	5.51895e-17
Populus trichocarpa	Chr15	13	CH_ptr_741	7	9	0.00051199
Populus trichocarpa	Chr17	13	CH_ptr_71	30	66	1.67365e-18
Populus trichocarpa	Chr18	13	CH_ptr_348	18	53	0.00000033156
Populus trichocarpa	Chr04	14	CH_ptr_106	10	19	0.0000894387
Populus trichocarpa	Chr18	14	CH_ptr_96	18	53	0.00000033156
Prunus persica	scaffold_2	13	CH_ppe_333	9	11	0.00000037581
Prunus persica	scaffold_2	14	CH_ppe_111	10	21	0.0000689193
Prunus persica	scaffold_6	14	CH_ppe_115	21	112	0.0000979332
Ricinus communis	30128	13	CH_rco_416	7	11	0.00068492
Solanum lycopersicum	ch07	13	CH_sly_249	13	28	0.0000000497
Solanum lycopersicum	ch12	13	CH_sly_51	16	17	1.25779e-18
Solanum lycopersicum	ch07	14	CH_sly_60	13	28	0.0000000497
Solanum lycopersicum	ch12	14	CH_sly_35	16	17	1.25779e-18
Solanum tuberosum	chr04	13	CH_stu_211	15	21	0.00000000000134731
Solanum tuberosum	chr05	13	CH_stu_31	30	38	8.46869e-31
Solanum tuberosum	chr08	13	CH_stu_602	7	7	0.00000536294
Solanum tuberosum	chr04	14	CH_stu_83	35	118	9.82734e-17
Thellungiella parvula	ch2-2	14	CH_tpa_11	10	18	0.00000503293
Theobroma cacao	scaffold_6	13	CH_tca_353	18	73	0.00000532106
Theobroma cacao	scaffold_6	14	CH_tca_58	18	73	0.00000532106
Vitis vinifera	chr4	13	CH_vvi_204	10	12	0.0000000129872
Vitis vinifera	chr18	14	CH_vvi_67	10	11	0.00000000224354
Vitis vinifera	chr4	14	CH_vvi_69	10	12	0.0000000129872
Zea mays	1	13	CH_zma_110	10	12	0.00000000820112
Zea mays	8	13	CH_zma_504	6	7	0.000560661
Zea mays	1	14	CH_zma_24	10	12	0.00000000820112

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V