PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000620
Description: Drug/metabolite transporter

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00018	13	CH_atr_157	5	9	0.0000000280668
Amborella trichopoda	scaffold00040	13	CH_atr_445	4	12	0.000306773
Amborella trichopoda	scaffold00055	13	CH_atr_31	11	23	1.11976e-19
Amborella trichopoda	scaffold00131	13	CH_atr_173	5	8	0.0000000747111
Amborella trichopoda	scaffold00055	14	CH_atr_26	11	23	1.11976e-19
Arabidopsis lyrata	scaffold_5	13	CH_aly_154	5	6	0.00000000689584
Arabidopsis thaliana	3	13	CH_ath_97	6	8	0.0000000000562482
Arabidopsis thaliana	4	13	CH_ath_475	3	3	0.00027843
Brassica rapa	A02	13	CH_bra_492	3	3	0.000819285
Capsella rubella	scaffold_5	13	CH_cru_288	4	5	0.00000510242
Capsella rubella	scaffold_6	13	CH_cru_485	3	3	0.000418614
Capsella rubella	scaffold_7	13	CH_cru_242	4	4	0.00000102249
Carica papaya	supercontig_36	13	CH_cpa_59	5	6	0.00000000339621
Carica papaya	supercontig_36	13	CH_cpa_307	4	12	0.000150266
Citrullus lanatus	Chr1	13	CH_cla_213	4	6	0.00000943068
Citrullus lanatus	Chr6	13	CH_cla_173	4	4	0.000000630955
Citrus sinensis	scaffold00003	13	CH_csi_290	3	3	0.000326256
Citrus sinensis	scaffold00024	13	CH_csi_289	3	3	0.000326256
Citrus sinensis	scaffold00028	13	CH_csi_67	6	10	0.0000000010489
Citrus sinensis	scaffold00048	13	CH_csi_288	3	3	0.000326256
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_403	3	3	0.000332412
Eucalyptus grandis	scaffold_10	13	CH_egr_370	7	11	0.00000000000426026
Eucalyptus grandis	scaffold_11	13	CH_egr_843	4	5	0.00000548783
Eucalyptus grandis	scaffold_2	13	CH_egr_1220	3	3	0.00047049
Eucalyptus grandis	scaffold_2	13	CH_egr_791	5	12	0.00000198312
Eucalyptus grandis	scaffold_4	13	CH_egr_1221	3	3	0.00047049
Eucalyptus grandis	scaffold_7	13	CH_egr_575	5	6	0.0000000151986
Eucalyptus grandis	scaffold_9	13	CH_egr_420	6	7	0.0000000000404077
Fragaria vesca	LG1	13	CH_fve_336	5	20	0.00000799534
Fragaria vesca	LG2	13	CH_fve_555	3	3	0.000184046
Fragaria vesca	LG7	13	CH_fve_664	3	4	0.000735218
Fragaria vesca	scf0513124	13	CH_fve_311	4	6	0.00000469857
Glycine max	Gm01	13	CH_gma_502	4	5	0.0000273171
Glycine max	Gm04	13	CH_gma_90	7	7	0.00000000000016447
Glycine max	Gm06	13	CH_gma_91	7	7	0.00000000000016447
Glycine max	Gm06	13	CH_gma_427	4	4	0.00000547722
Glycine max	Gm04	14	CH_gma_62	10	105	0.000000103829
Glycine max	Gm06	14	CH_gma_51	12	115	0.000000000196098
Gossypium raimondii	Chr05	13	CH_gra_579	3	3	0.000757288
Gossypium raimondii	Chr09	13	CH_gra_252	5	8	0.000000297682
Gossypium raimondii	Chr12	13	CH_gra_296	4	4	0.00000202316
Lotus japonicus	chr1	13	CH_lja_201	3	3	0.000102911
Lotus japonicus	chr4	13	CH_lja_36	6	16	0.00000000229089
Lotus japonicus	chr6	13	CH_lja_156	4	10	0.0000310214
Manihot esculenta	scaffold02906	13	CH_mes_366	3	3	0.000316562
Manihot esculenta	scaffold06011	13	CH_mes_171	4	5	0.00000374891
Medicago truncatula	chr1	13	CH_mtr_1202	4	16	0.000714204
Medicago truncatula	chr1	13	CH_mtr_587	5	14	0.00000120923
Medicago truncatula	chr2	13	CH_mtr_1025	3	3	0.000257092
Medicago truncatula	chr3	13	CH_mtr_610	5	15	0.00000181152
Medicago truncatula	chr3	13	CH_mtr_524	4	4	0.000000398317
Medicago truncatula	chr4	13	CH_mtr_486	5	10	0.000000152993
Medicago truncatula	chr5	13	CH_mtr_453	5	9	0.0000000765947
Medicago truncatula	chr5	13	CH_mtr_535	5	12	0.000000479605
Medicago truncatula	chr6	13	CH_mtr_229	6	7	0.00000000000648715
Medicago truncatula	chr8	13	CH_mtr_863	4	10	0.000083025
Oryza sativa ssp. japonica	1	13	CH_osa_788	3	4	0.000536507
Oryza sativa ssp. japonica	1	13	CH_osa_649	3	3	0.00013426
Oryza sativa ssp. japonica	7	13	CH_osa_233	7	39	0.00000000527824
Oryza sativa ssp. japonica	9	13	CH_osa_321	4	4	0.000000174865
Populus trichocarpa	Chr06	13	CH_ptr_642	3	3	0.000231398
Prunus persica	scaffold_1	13	CH_ppe_192	6	9	0.00000000020327
Prunus persica	scaffold_1	13	CH_ppe_637	3	3	0.00028053
Prunus persica	scaffold_3	13	CH_ppe_638	3	3	0.00028053
Ricinus communis	29168	13	CH_rco_242	4	7	0.0000192461
Ricinus communis	29822	13	CH_rco_94	5	5	0.00000000119449
Solanum lycopersicum	ch01	13	CH_sly_183	5	5	0.00000000140288
Solanum lycopersicum	ch05	13	CH_sly_182	5	5	0.00000000140288
Solanum lycopersicum	ch08	13	CH_sly_650	3	3	0.000333425
Solanum tuberosum	chr01	13	CH_stu_232	6	6	0.00000000000729474
Solanum tuberosum	chr05	13	CH_stu_343	5	5	0.00000000308717
Solanum tuberosum	chr08	13	CH_stu_528	4	4	0.00000129099
Solanum tuberosum	chr11	13	CH_stu_944	4	10	0.000267965
Thellungiella parvula	ch1-1	13	CH_tpa_303	3	3	0.000496349
Thellungiella parvula	ch1-1	13	CH_tpa_135	4	4	0.00000130177
Thellungiella parvula	ch6-1	13	CH_tpa_134	4	4	0.00000130177
Thellungiella parvula	ch7-1	13	CH_tpa_62	5	5	0.00000000336254
Theobroma cacao	scaffold_1	13	CH_tca_594	3	3	0.000470728
Theobroma cacao	scaffold_1	13	CH_tca_499	4	9	0.000144142
Theobroma cacao	scaffold_10r	13	CH_tca_317	4	4	0.00000115532
Theobroma cacao	scaffold_2	13	CH_tca_593	3	3	0.000470728
Theobroma cacao	scaffold_2	13	CH_tca_394	4	6	0.0000172615
Theobroma cacao	scaffold_4	13	CH_tca_153	6	9	0.000000000557064
Vitis vinifera	chr1	13	CH_vvi_201	6	13	0.00000000914684
Vitis vinifera	chr18	13	CH_vvi_592	3	3	0.000406487
Vitis vinifera	chr2	13	CH_vvi_371	4	5	0.00000488245
Vitis vinifera	chr4	13	CH_vvi_26	13	17	2.99177e-27
Vitis vinifera	chr4	14	CH_vvi_27	13	17	2.99177e-27
Zea mays	7	13	CH_zma_539	3	4	0.000829659
Zea mays	9	13	CH_zma_204	5	16	0.00000249837

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V