PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR000528
Description: Plant lipid transfer protein/Par allergen

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00077	13	CH_atr_158	4	5	0.0000000286929
Amborella trichopoda	scaffold00092	13	CH_atr_131	4	4	0.00000000574153
Arabidopsis lyrata	scaffold_8	13	CH_aly_323	3	3	0.0000137532
Arabidopsis thaliana	5	13	CH_ath_314	3	3	0.0000122225
Beta vulgaris	Bvchr7.sca001	13	CH_bvu_112	4	4	0.00000000491676
Beta vulgaris	Bvchr9.sca026	13	CH_bvu_229	3	3	0.00000783278
Capsella rubella	scaffold_4	13	CH_cru_340	3	3	0.0000255599
Capsella rubella	scaffold_8	13	CH_cru_341	3	3	0.0000255599
Carica papaya	supercontig_157	13	CH_cpa_37	5	5	0.0000000000224247
Carica papaya	supercontig_9	13	CH_cpa_12	8	11	2.06917e-18
Eucalyptus grandis	scaffold_1	13	CH_egr_874	3	3	0.00000906866
Eucalyptus grandis	scaffold_11	13	CH_egr_875	3	3	0.00000906866
Fragaria vesca	LG6	13	CH_fve_102	5	6	0.0000000000152297
Glycine max	Gm01	13	CH_gma_341	5	24	0.000000502628
Glycine max	Gm03	13	CH_gma_272	6	42	0.0000000420413
Glycine max	Gm09	13	CH_gma_493	3	3	0.0000235747
Gossypium raimondii	Chr01	13	CH_gra_387	3	3	0.0000456468
Gossypium raimondii	Chr11	13	CH_gra_220	4	4	0.0000000463407
Lotus japonicus	chr5	13	CH_lja_106	3	3	0.00000149147
Malus domestica	12	13	CH_mdo_151	4	9	0.00000039427
Manihot esculenta	scaffold08265	13	CH_mes_103	4	4	0.000000118973
Manihot esculenta	scaffold09360	13	CH_mes_235	3	3	0.0000808634
Medicago truncatula	chr3	13	CH_mtr_206	7	19	0.000000000000867663
Medicago truncatula	chr4	13	CH_mtr_137	10	77	0.00000000000000352995
Medicago truncatula	chr7	13	CH_mtr_14	18	42	1.00074e-40
Medicago truncatula	chr4	14	CH_mtr_96	10	77	0.00000000000000352995
Medicago truncatula	chr7	14	CH_mtr_17	18	42	1.00074e-40
Oryza sativa ssp. japonica	11	13	CH_osa_288	4	6	0.0000000485213
Oryza sativa ssp. japonica	12	13	CH_osa_126	5	5	0.00000000000144393
Oryza sativa ssp. japonica	7	13	CH_osa_424	4	14	0.00000322829
Populus trichocarpa	Chr02	13	CH_ptr_278	4	4	0.0000000244757
Populus trichocarpa	Chr16	13	CH_ptr_205	5	7	0.000000000421812
Prunus persica	scaffold_5	13	CH_ppe_730	3	7	0.00070745
Prunus persica	scaffold_6	13	CH_ppe_112	6	7	0.0000000000000705572
Ricinus communis	29983	13	CH_rco_250	3	3	0.0000332695
Ricinus communis	30174	13	CH_rco_325	3	4	0.000132964
Solanum lycopersicum	ch01	13	CH_sly_467	3	3	0.0000416553
Solanum lycopersicum	ch08	13	CH_sly_95	6	6	0.0000000000000386277
Solanum lycopersicum	ch10	13	CH_sly_50	9	17	6.55984e-19
Solanum tuberosum	chr06	13	CH_stu_447	4	4	0.000000127499
Solanum tuberosum	chr08	13	CH_stu_313	5	6	0.00000000100069
Solanum tuberosum	chr10	13	CH_stu_119	7	7	2.67944e-16
Solanum tuberosum	chr10	13	CH_stu_279	5	5	0.000000000166965
Thellungiella parvula	ch6-6	13	CH_tpa_171	3	3	0.000014589
Theobroma cacao	scaffold_4	13	CH_tca_240	4	5	0.000000130149

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V