Functional clusters
Information
- Type
- GO term
- Identifier
- GO:2000112
- Description
- regulation of cellular macromolecule biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_84 | 32 | 174 | 0.000882268 |
Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_75 | 34 | 174 | 0.000148562 |
Arabidopsis lyrata | scaffold_2 | 11 | CH_aly_3 | 39 | 231 | 0.00000176195 |
Arabidopsis lyrata | scaffold_2 | 12 | CH_aly_3 | 39 | 231 | 0.00000469511 |
Capsella rubella | scaffold_1 | 5 | CH_cru_82 | 33 | 157 | 0.000780683 |
Capsella rubella | scaffold_1 | 6 | CH_cru_99 | 34 | 157 | 0.000384772 |
Carica papaya | supercontig_80 | 5 | CH_cpa_19 | 12 | 27 | 0.000196462 |
Physcomitrella patens | scaffold_259 | 2 | CH_ppa_65 | 9 | 20 | 0.000615887 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | 2 |
GO:0006355 | regulation of transcription, DNA-dependent | 118 |
GO:0006357 | regulation of transcription from RNA polymerase II promoter | 4 |
GO:0006450 | regulation of translational fidelity | 4 |
GO:0017148 | negative regulation of translation | 1 |
GO:0031564 | transcription antitermination | 2 |
GO:0031935 | regulation of chromatin silencing | 6 |
GO:0032784 | regulation of DNA-dependent transcription, elongation | 11 |
GO:0032786 | positive regulation of DNA-dependent transcription, elongation | 1 |
GO:0032877 | positive regulation of DNA endoreduplication | 2 |
GO:0032951 | regulation of beta-glucan biosynthetic process | 6 |
GO:0032953 | regulation of (1->3)-beta-D-glucan biosynthetic process | 2 |
GO:0035278 | negative regulation of translation involved in gene silencing by miRNA | 18 |
GO:0045014 | negative regulation of transcription by glucose | 2 |
GO:0045892 | negative regulation of transcription, DNA-dependent | 2 |
GO:0045893 | positive regulation of transcription, DNA-dependent | 4 |
GO:0045900 | negative regulation of translational elongation | 3 |
GO:0045901 | positive regulation of translational elongation | 3 |
GO:0051090 | regulation of sequence-specific DNA binding transcription factor activity | 7 |
GO:0051973 | positive regulation of telomerase activity | 4 |
GO:0090296 | regulation of mitochondrial DNA replication | 3 |
GO:0090309 | positive regulation of methylation-dependent chromatin silencing | 8 |
GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |