PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00101	2	CH_csi_23	5	5	0.00000000000270226
Citrus sinensis	scaffold00101	3	CH_csi_30	5	5	0.00000000000270226
Glycine max	Gm13	2	CH_gma_114	4	4	0.0000000138883
Glycine max	Gm20	2	CH_gma_332	3	5	0.000202674
Glycine max	Gm13	3	CH_gma_140	4	4	0.0000000138883
Glycine max	Gm20	3	CH_gma_401	3	5	0.000202674
Gossypium raimondii	Chr04	2	CH_gra_172	3	4	0.0000116436
Gossypium raimondii	Chr04	2	CH_gra_116	4	7	0.0000000380829
Gossypium raimondii	Chr04	3	CH_gra_138	4	7	0.0000000380829
Lotus japonicus	chr3	2	CH_lja_33	4	14	0.000000300454
Lotus japonicus	chr3	3	CH_lja_50	4	14	0.000000300454
Medicago truncatula	chr3	3	CH_mtr_525	3	4	0.0000253754
Medicago truncatula	chr8	3	CH_mtr_10	13	27	4.35943e-33
Medicago truncatula	chr8	6	CH_mtr_11	13	27	4.35943e-33
Oryza sativa ssp. japonica	3	3	CH_osa_365	3	11	0.000114552
Populus trichocarpa	Chr01	3	CH_ptr_167	4	4	0.00000000179551
Prunus persica	scaffold_2	3	CH_ppe_258	3	3	0.00000283726
Prunus persica	scaffold_6	3	CH_ppe_84	5	6	0.00000000000243231

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V