PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	2	CH_egr_688	10	70	0.000189414
Zea mays	3	6	CH_zma_53	13	129	0.000845533

GO term	Description	Number of clusters
GO:0000124	SAGA complex	5
GO:0000151	ubiquitin ligase complex	12
GO:0000159	protein phosphatase type 2A complex	1
GO:0000418	DNA-directed RNA polymerase IV complex	2
GO:0000419	DNA-directed RNA polymerase V complex	2
GO:0005665	DNA-directed RNA polymerase II, core complex	1
GO:0005669	transcription factor TFIID complex	2
GO:0005672	transcription factor TFIIA complex	9
GO:0005673	transcription factor TFIIE complex	3
GO:0005674	transcription factor TFIIF complex	10
GO:0005680	anaphase-promoting complex	11
GO:0005787	signal peptidase complex	3
GO:0005971	ribonucleoside-diphosphate reductase complex	6
GO:0008250	oligosaccharyltransferase complex	2
GO:0008287	protein serine/threonine phosphatase complex	4
GO:0009316	3-isopropylmalate dehydratase complex	1
GO:0009317	acetyl-CoA carboxylase complex	4
GO:0009341	beta-galactosidase complex	3
GO:0009360	DNA polymerase III complex	2
GO:0009573	chloroplast ribulose bisphosphate carboxylase complex	4
GO:0009654	photosystem II oxygen evolving complex	10
GO:0016591	DNA-directed RNA polymerase II, holoenzyme	3
GO:0019005	SCF ubiquitin ligase complex	5
GO:0031011	Ino80 complex	11
GO:0031461	cullin-RING ubiquitin ligase complex	13
GO:0031463	Cul3-RING ubiquitin ligase complex	2
GO:0032039	integrator complex	4
GO:0032777	Piccolo NuA4 histone acetyltransferase complex	9
GO:0042765	GPI-anchor transamidase complex	2
GO:0043189	H4/H2A histone acetyltransferase complex	3
GO:0048188	Set1C/COMPASS complex	2
GO:0070461	SAGA-type complex	5

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V