PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A10	2	CH_bra_251	2	3	0.000446576
Brassica rapa	A10	3	CH_bra_296	2	3	0.000446576
Citrullus lanatus	Chr10	2	CH_cla_176	2	3	0.00025533
Eucalyptus grandis	scaffold_9	2	CH_egr_72	8	31	5.77517e-21
Fragaria vesca	scf0513124	2	CH_fve_258	2	2	0.000179635
Fragaria vesca	scf0513124	3	CH_fve_338	2	2	0.000179635
Lotus japonicus	chr2	2	CH_lja_9	4	5	0.00000000000455774
Lotus japonicus	chr2	3	CH_lja_10	4	5	0.00000000000455774
Medicago truncatula	chr6	2	CH_mtr_85	5	12	0.000000000000110475
Medicago truncatula	chr6	3	CH_mtr_109	5	12	0.000000000000110475
Populus trichocarpa	scaffold_20	2	CH_ptr_467	2	3	0.000896385
Prunus persica	scaffold_3	2	CH_ppe_344	2	2	0.000216255
Thellungiella parvula	ch6-6	2	CH_tpa_128	2	2	0.0000794691
Thellungiella parvula	ch6-6	3	CH_tpa_154	2	2	0.0000794691

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V