Functional clusters
Information
- Type
- GO term
- Identifier
- GO:1901657
- Description
- glycosyl compound metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_61 | 13 | 129 | 0.00011015 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0006148 | inosine catabolic process | 2 |
GO:0006154 | adenosine catabolic process | 18 |
GO:0006169 | adenosine salvage | 4 |
GO:0006177 | GMP biosynthetic process | 2 |
GO:0006183 | GTP biosynthetic process | 11 |
GO:0006184 | GTP catabolic process | 6 |
GO:0006200 | ATP catabolic process | 7 |
GO:0006556 | S-adenosylmethionine biosynthetic process | 3 |
GO:0006557 | S-adenosylmethioninamine biosynthetic process | 3 |
GO:0008616 | queuosine biosynthetic process | 8 |
GO:0009116 | nucleoside metabolic process | 16 |
GO:0009759 | indole glucosinolate biosynthetic process | 55 |
GO:0009972 | cytidine deamination | 15 |
GO:0010439 | regulation of glucosinolate biosynthetic process | 2 |
GO:0015969 | guanosine tetraphosphate metabolic process | 1 |
GO:0015986 | ATP synthesis coupled proton transport | 7 |
GO:0019756 | cyanogenic glycoside biosynthetic process | 1 |
GO:0019760 | glucosinolate metabolic process | 1 |
GO:0019762 | glucosinolate catabolic process | 1 |
GO:0032312 | regulation of ARF GTPase activity | 3 |
GO:0032313 | regulation of Rab GTPase activity | 3 |
GO:0033506 | glucosinolate biosynthetic process from homomethionine | 4 |
GO:0042343 | indole glucosinolate metabolic process | 4 |
GO:0044205 | 'de novo' UMP biosynthetic process | 8 |
GO:0046033 | AMP metabolic process | 4 |
GO:0046034 | ATP metabolic process | 4 |
GO:0070526 | threonylcarbamoyladenosine biosynthetic process | 2 |
GO:0080178 | 5-carbamoylmethyluridine metabolic process | 2 |
GO:0080180 | 2-methylguanosine metabolic process | 2 |
GO:1901038 | cyanidin 3-O-glucoside metabolic process | 20 |
GO:2001295 | malonyl-CoA biosynthetic process | 3 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |