Functional clusters
Information
- Type
- GO term
- Identifier
- GO:1901607
- Description
- alpha-amino acid biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_10 | 4 | CH_egr_249 | 10 | 222 | 0.000615311 |
Gossypium raimondii | Chr11 | 5 | CH_gra_40 | 11 | 46 | 0.0000000000290711 |
Gossypium raimondii | Chr11 | 6 | CH_gra_51 | 11 | 46 | 0.0000000000763509 |
Lotus japonicus | chr1 | 2 | CH_lja_68 | 4 | 4 | 0.00000630205 |
Lotus japonicus | chr1 | 3 | CH_lja_88 | 4 | 4 | 0.00000883445 |
Lotus japonicus | chr1 | 8 | CH_lja_3 | 4 | 4 | 0.00000238316 |
Lotus japonicus | chr1 | 9 | CH_lja_3 | 4 | 4 | 0.00000340847 |
Oryza sativa ssp. japonica | 12 | 1 | CH_osa_294 | 5 | 22 | 0.000107387 |
Oryza sativa ssp. japonica | 12 | 2 | CH_osa_353 | 5 | 22 | 0.00026876 |
Oryza sativa ssp. japonica | 12 | 3 | CH_osa_443 | 5 | 22 | 0.000443382 |
Solanum tuberosum | chr01 | 6 | CH_stu_150 | 10 | 83 | 0.00000216185 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000162 | tryptophan biosynthetic process | 1 |
GO:0006529 | asparagine biosynthetic process | 4 |
GO:0006535 | cysteine biosynthetic process from serine | 12 |
GO:0006542 | glutamine biosynthetic process | 8 |
GO:0006571 | tyrosine biosynthetic process | 9 |
GO:0008612 | peptidyl-lysine modification to hypusine | 3 |
GO:0009067 | aspartate family amino acid biosynthetic process | 1 |
GO:0009098 | leucine biosynthetic process | 1 |
GO:0019281 | L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine | 1 |
GO:0019509 | L-methionine salvage from methylthioadenosine | 14 |
GO:0042450 | arginine biosynthetic process via ornithine | 1 |
GO:0046901 | tetrahydrofolylpolyglutamate biosynthetic process | 4 |
GO:0071266 | 'de novo' L-methionine biosynthetic process | 9 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |