Functional clusters   top

Information

Type
GO term
Identifier
GO:1901607
Description
alpha-amino acid biosynthetic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eucalyptus grandisscaffold_104CH_egr_249102220.000615311
Gossypium raimondiiChr115CH_gra_4011460.0000000000290711
Gossypium raimondiiChr116CH_gra_5111460.0000000000763509
Lotus japonicuschr12CH_lja_68440.00000630205
Lotus japonicuschr13CH_lja_88440.00000883445
Lotus japonicuschr18CH_lja_3440.00000238316
Lotus japonicuschr19CH_lja_3440.00000340847
Oryza sativa ssp. japonica121CH_osa_2945220.000107387
Oryza sativa ssp. japonica122CH_osa_3535220.00026876
Oryza sativa ssp. japonica123CH_osa_4435220.000443382
Solanum tuberosumchr016CH_stu_15010830.00000216185

Available child term results

GO term Description Number of clusters
GO:0000162tryptophan biosynthetic process1
GO:0006529asparagine biosynthetic process4
GO:0006535cysteine biosynthetic process from serine12
GO:0006542glutamine biosynthetic process8
GO:0006571tyrosine biosynthetic process9
GO:0008612peptidyl-lysine modification to hypusine3
GO:0009067aspartate family amino acid biosynthetic process1
GO:0009098leucine biosynthetic process1
GO:0019281L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine1
GO:0019509L-methionine salvage from methylthioadenosine14
GO:0042450arginine biosynthetic process via ornithine1
GO:0046901tetrahydrofolylpolyglutamate biosynthetic process4
GO:0071266'de novo' L-methionine biosynthetic process9

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V