PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	6	CH_aly_54	10	57	0.00000889544
Brassica rapa	A01	6	CH_bra_19	14	86	0.0000000187941
Thellungiella parvula	ch7-5	3	CH_tpa_131	6	13	0.0000414987

GO term	Description	Number of clusters
GO:0006042	glucosamine biosynthetic process	1
GO:0006065	UDP-glucuronate biosynthetic process	5
GO:0006169	adenosine salvage	4
GO:0006177	GMP biosynthetic process	2
GO:0006182	cGMP biosynthetic process	27
GO:0006183	GTP biosynthetic process	11
GO:0006231	dTMP biosynthetic process	7
GO:0006233	dTDP biosynthetic process	3
GO:0006471	protein ADP-ribosylation	9
GO:0006486	protein glycosylation	5
GO:0006556	S-adenosylmethionine biosynthetic process	3
GO:0006557	S-adenosylmethioninamine biosynthetic process	3
GO:0008616	queuosine biosynthetic process	8
GO:0009101	glycoprotein biosynthetic process	13
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009247	glycolipid biosynthetic process	1
GO:0009252	peptidoglycan biosynthetic process	5
GO:0009759	indole glucosinolate biosynthetic process	55
GO:0010439	regulation of glucosinolate biosynthetic process	2
GO:0015986	ATP synthesis coupled proton transport	7
GO:0016255	attachment of GPI anchor to protein	38
GO:0018279	protein N-linked glycosylation via asparagine	2
GO:0019277	UDP-N-acetylgalactosamine biosynthetic process	1
GO:0019305	dTDP-rhamnose biosynthetic process	2
GO:0019375	galactolipid biosynthetic process	2
GO:0033506	glucosinolate biosynthetic process from homomethionine	4
GO:0042351	'de novo' GDP-L-fucose biosynthetic process	2
GO:0044205	'de novo' UMP biosynthetic process	8
GO:2001295	malonyl-CoA biosynthetic process	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V