PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:1901135
Description: carbohydrate derivative metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	6	CH_aly_57	26	300	0.0000117956
Arabidopsis thaliana	4	5	CH_ath_85	32	247	0.0000382944
Arabidopsis thaliana	4	6	CH_ath_93	33	247	0.0000388869
Beta vulgaris	Bvchr1.sca001	1	CH_bvu_218	4	4	0.000727102
Beta vulgaris	Bvchr1.sca001	7	CH_bvu_10	4	4	0.000476653
Beta vulgaris	Bvchr1.sca001	8	CH_bvu_13	4	4	0.000962521
Lotus japonicus	chr6	2	CH_lja_170	8	70	0.000861341

Available child term results

GO term	Description	Number of clusters
GO:0006003	fructose 2,6-bisphosphate metabolic process	4
GO:0006032	chitin catabolic process	106
GO:0006040	amino sugar metabolic process	2
GO:0006042	glucosamine biosynthetic process	1
GO:0006065	UDP-glucuronate biosynthetic process	5
GO:0006148	inosine catabolic process	2
GO:0006154	adenosine catabolic process	18
GO:0006169	adenosine salvage	4
GO:0006177	GMP biosynthetic process	2
GO:0006182	cGMP biosynthetic process	27
GO:0006183	GTP biosynthetic process	11
GO:0006184	GTP catabolic process	6
GO:0006200	ATP catabolic process	7
GO:0006231	dTMP biosynthetic process	7
GO:0006233	dTDP biosynthetic process	3
GO:0006471	protein ADP-ribosylation	9
GO:0006486	protein glycosylation	5
GO:0006505	GPI anchor metabolic process	2
GO:0006516	glycoprotein catabolic process	2
GO:0006556	S-adenosylmethionine biosynthetic process	3
GO:0006557	S-adenosylmethioninamine biosynthetic process	3
GO:0008616	queuosine biosynthetic process	8
GO:0009101	glycoprotein biosynthetic process	13
GO:0009116	nucleoside metabolic process	16
GO:0009225	nucleotide-sugar metabolic process	6
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009247	glycolipid biosynthetic process	1
GO:0009252	peptidoglycan biosynthetic process	5
GO:0009759	indole glucosinolate biosynthetic process	55
GO:0009972	cytidine deamination	15
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010439	regulation of glucosinolate biosynthetic process	2
GO:0015969	guanosine tetraphosphate metabolic process	1
GO:0015986	ATP synthesis coupled proton transport	7
GO:0016255	attachment of GPI anchor to protein	38
GO:0018279	protein N-linked glycosylation via asparagine	2
GO:0019277	UDP-N-acetylgalactosamine biosynthetic process	1
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9
GO:0019305	dTDP-rhamnose biosynthetic process	2
GO:0019375	galactolipid biosynthetic process	2
GO:0019760	glucosinolate metabolic process	1
GO:0019762	glucosinolate catabolic process	1
GO:0032312	regulation of ARF GTPase activity	3
GO:0032313	regulation of Rab GTPase activity	3
GO:0033356	UDP-L-arabinose metabolic process	2
GO:0033506	glucosinolate biosynthetic process from homomethionine	4
GO:0042343	indole glucosinolate metabolic process	4
GO:0042351	'de novo' GDP-L-fucose biosynthetic process	2
GO:0044205	'de novo' UMP biosynthetic process	8
GO:0046033	AMP metabolic process	4
GO:0046034	ATP metabolic process	4
GO:0046477	glycosylceramide catabolic process	3
GO:0070526	threonylcarbamoyladenosine biosynthetic process	2
GO:0080178	5-carbamoylmethyluridine metabolic process	2
GO:0080180	2-methylguanosine metabolic process	2
GO:1901038	cyanidin 3-O-glucoside metabolic process	20
GO:1901136	carbohydrate derivative catabolic process	18
GO:1901137	carbohydrate derivative biosynthetic process	3
GO:2001295	malonyl-CoA biosynthetic process	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V