PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0097159
Description: organic cyclic compound binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr7.sca021	4	CH_bvu_34	38	76	0.000537278
Zea mays	10	4	CH_zma_35	82	252	0.000445087

Available child term results

GO term	Description	Number of clusters
GO:0000049	tRNA binding	2
GO:0000166	nucleotide binding	38
GO:0000499	base pairing with mRNA	57
GO:0000774	adenyl-nucleotide exchange factor activity	4
GO:0000976	transcription regulatory region sequence-specific DNA binding	3
GO:0001164	RNA polymerase I CORE element sequence-specific DNA binding	1
GO:0003676	nucleic acid binding	73
GO:0003677	DNA binding	85
GO:0003684	damaged DNA binding	4
GO:0003689	DNA clamp loader activity	5
GO:0003723	RNA binding	22
GO:0003725	double-stranded RNA binding	5
GO:0003729	mRNA binding	1
GO:0003730	mRNA 3'-UTR binding	12
GO:0003746	translation elongation factor activity	47
GO:0003747	translation release factor activity	1
GO:0005524	ATP binding	54
GO:0005525	GTP binding	29
GO:0005542	folic acid binding	38
GO:0008097	5S rRNA binding	7
GO:0008143	poly(A) RNA binding	4
GO:0008312	7S RNA binding	1
GO:0008327	methyl-CpG binding	1
GO:0009374	biotin binding	2
GO:0010181	FMN binding	71
GO:0016149	translation release factor activity, codon specific	7
GO:0016168	chlorophyll binding	2
GO:0016208	AMP binding	3
GO:0017069	snRNA binding	9
GO:0017070	U6 snRNA binding	3
GO:0017076	purine nucleotide binding	9
GO:0019843	rRNA binding	12
GO:0020037	heme binding	272
GO:0030553	cGMP binding	3
GO:0030554	adenyl nucleotide binding	12
GO:0030619	U1 snRNA binding	4
GO:0030976	thiamine pyrophosphate binding	15
GO:0030983	mismatched DNA binding	1
GO:0032549	ribonucleoside binding	11
GO:0032553	ribonucleotide binding	14
GO:0032555	purine ribonucleotide binding	30
GO:0032559	adenyl ribonucleotide binding	76
GO:0032934	sterol binding	2
GO:0035197	siRNA binding	3
GO:0035198	miRNA binding	4
GO:0035639	purine ribonucleoside triphosphate binding	18
GO:0043531	ADP binding	1129
GO:0043546	molybdopterin cofactor binding	9
GO:0043565	sequence-specific DNA binding	40
GO:0046906	tetrapyrrole binding	4
GO:0050660	flavin adenine dinucleotide binding	43
GO:0050661	NADP binding	7
GO:0051287	NAD binding	53
GO:0070401	NADP+ binding	25
GO:0070403	NAD+ binding	6
GO:0080084	5S rDNA binding	4
GO:0090411	brassinosteroid binding	50
GO:0097100	supercoiled DNA binding	10
GO:0097157	pre-mRNA intronic binding	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V