PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. japonica	12	2	CH_osa_410	2	2	0.000749318
Oryza sativa ssp. japonica	12	3	CH_osa_477	2	2	0.000749318
Solanum lycopersicum	ch02	1	CH_sly_133	4	5	0.0000000137213
Solanum lycopersicum	ch03	1	CH_sly_250	3	4	0.0000225075
Solanum lycopersicum	ch02	2	CH_sly_132	4	5	0.0000000137213
Solanum lycopersicum	ch03	2	CH_sly_272	3	4	0.0000225075
Solanum lycopersicum	ch02	3	CH_sly_173	4	5	0.0000000137213
Solanum lycopersicum	ch03	3	CH_sly_365	3	4	0.0000225075
Zea mays	4	2	CH_zma_222	2	2	0.000502917
Zea mays	4	3	CH_zma_309	2	2	0.000502917

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V