PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr2	3	CH_cla_174	5	11	0.0000613215
Cucumis melo	CM3.5_scaffold00059	6	CH_cme_30	10	67	0.0000000387967
Eucalyptus grandis	scaffold_9	2	CH_egr_764	2	2	0.000584266
Eucalyptus grandis	scaffold_1	6	CH_egr_198	12	169	0.0000000289134

GO term	Description	Number of clusters
GO:0005618	cell wall	17
GO:0005886	plasma membrane	35
GO:0005901	caveola	4
GO:0005938	cell cortex	3
GO:0008076	voltage-gated potassium channel complex	3
GO:0009274	peptidoglycan-based cell wall	6
GO:0009276	Gram-negative-bacterium-type cell wall	3
GO:0009279	cell outer membrane	6
GO:0009505	plant-type cell wall	24
GO:0009897	external side of plasma membrane	1
GO:0009925	basal plasma membrane	4
GO:0030288	outer membrane-bounded periplasmic space	30
GO:0030981	cortical microtubule cytoskeleton	8

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V