PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Prunus persica	scaffold_6	6	CH_ppe_128	10	93	0.0000464061

GO term	Description	Number of clusters
GO:0003333	amino acid transmembrane transport	22
GO:0006857	oligopeptide transport	163
GO:0006865	amino acid transport	7
GO:0015706	nitrate transport	2
GO:0015802	basic amino acid transport	6
GO:0015804	neutral amino acid transport	4
GO:0015810	aspartate transport	8
GO:0015812	gamma-aminobutyric acid transport	13
GO:0015843	methylammonium transport	13
GO:0015846	polyamine transport	2
GO:0015853	adenine transport	4
GO:0015864	pyrimidine nucleoside transport	20
GO:0015886	heme transport	26
GO:0032973	amino acid export	1
GO:0034775	glutathione transmembrane transport	6
GO:0043090	amino acid import	4
GO:0051028	mRNA transport	1
GO:0051938	L-glutamate import	2
GO:0072488	ammonium transmembrane transport	2
GO:0080143	regulation of amino acid export	12
GO:2001142	nicotinate transport	5

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V