PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0052689
Description: carboxylic ester hydrolase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	1	CH_atr_112	5	9	0.00000608814
Amborella trichopoda	scaffold00010	2	CH_atr_123	5	9	0.0000107938
Amborella trichopoda	scaffold00010	3	CH_atr_206	5	9	0.0000168133
Amborella trichopoda	scaffold00038	6	CH_atr_41	10	47	0.00000000264159
Arabidopsis lyrata	scaffold_6	4	CH_aly_14	10	40	0.0000000100082
Arabidopsis thaliana	5	4	CH_ath_23	10	33	0.00000000192772
Arabidopsis thaliana	5	5	CH_ath_36	10	33	0.00000000200236
Arabidopsis thaliana	5	6	CH_ath_41	10	33	0.00000000232753
Capsella rubella	scaffold_6	4	CH_cru_15	11	34	0.000000000246894
Eucalyptus grandis	scaffold_5	4	CH_egr_137	11	72	0.00000000659857
Eucalyptus grandis	scaffold_8	4	CH_egr_199	13	221	0.00000943754
Eucalyptus grandis	scaffold_5	5	CH_egr_171	11	72	0.0000000440115
Eucalyptus grandis	scaffold_8	5	CH_egr_252	13	221	0.000078985
Glycine max	Gm17	4	CH_gma_62	13	206	0.000104001
Glycine max	Gm17	5	CH_gma_82	13	206	0.000276216
Gossypium raimondii	Chr08	4	CH_gra_76	14	263	0.000427123
Medicago truncatula	chr1	4	CH_mtr_190	10	174	0.000419758
Medicago truncatula	chr2	4	CH_mtr_173	12	265	0.000182434
Medicago truncatula	chr1	5	CH_mtr_168	11	174	0.0000486644
Medicago truncatula	chr2	5	CH_mtr_206	12	265	0.00034791
Medicago truncatula	chr1	6	CH_mtr_218	11	174	0.000147756
Oryza sativa ssp. japonica	8	6	CH_osa_40	10	17	0.00000000000000134695
Prunus persica	scaffold_2	5	CH_ppe_122	10	129	0.000490149
Prunus persica	scaffold_2	6	CH_ppe_160	10	129	0.000845795
Solanum lycopersicum	ch01	1	CH_sly_66	13	31	0.000000000000240998
Solanum lycopersicum	ch04	1	CH_sly_230	5	5	0.00000626948
Solanum lycopersicum	ch08	1	CH_sly_291	6	12	0.0000610295
Solanum lycopersicum	ch09	1	CH_sly_231	5	5	0.00000626948
Solanum lycopersicum	ch01	2	CH_sly_69	13	31	0.00000000000030304
Solanum lycopersicum	ch04	2	CH_sly_243	5	5	0.00000684961
Solanum lycopersicum	ch08	2	CH_sly_318	6	12	0.000067806
Solanum lycopersicum	ch09	2	CH_sly_244	5	5	0.00000684961
Solanum lycopersicum	ch01	3	CH_sly_87	13	31	0.000000000000379501
Solanum lycopersicum	ch04	3	CH_sly_328	5	5	0.00000747192
Solanum lycopersicum	ch08	3	CH_sly_427	6	12	0.0000751954
Solanum lycopersicum	ch09	3	CH_sly_329	5	5	0.00000747192
Solanum lycopersicum	ch01	4	CH_sly_42	13	31	0.000000000000240998
Solanum lycopersicum	ch03	4	CH_sly_73	10	51	0.00000894254
Solanum lycopersicum	ch01	5	CH_sly_43	13	31	0.00000000000030304
Solanum lycopersicum	ch03	5	CH_sly_80	10	51	0.0000106059
Solanum lycopersicum	ch01	6	CH_sly_54	13	31	0.000000000000379501
Solanum lycopersicum	ch03	6	CH_sly_116	10	51	0.0000125395

Available child term results

GO term	Description	Number of clusters
GO:0004064	arylesterase activity	8
GO:0004104	cholinesterase activity	12
GO:0004623	phospholipase A2 activity	11
GO:0004806	triglyceride lipase activity	133
GO:0017057	6-phosphogluconolactonase activity	17
GO:0030599	pectinesterase activity	432
GO:0047714	galactolipase activity	4
GO:0047746	chlorophyllase activity	30
GO:0050525	cutinase activity	3
GO:0051499	D-aminoacyl-tRNA deacylase activity	5
GO:0080030	methyl indole-3-acetate esterase activity	10
GO:0080031	methyl salicylate esterase activity	23
GO:0080032	methyl jasmonate esterase activity	8

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V