PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0051537
Description: 2 iron, 2 sulfur cluster binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00086	3	CH_atr_61	5	5	0.0000000000814523
Carica papaya	supercontig_103	3	CH_cpa_180	3	4	0.0000870272
Citrullus lanatus	Chr5	2	CH_cla_122	3	3	0.0000219947
Citrullus lanatus	Chr5	3	CH_cla_156	3	3	0.000024994
Citrus sinensis	scaffold00124	3	CH_csi_117	3	3	0.000013682
Cucumis melo	CM3.5_scaffold00025	1	CH_cme_77	4	6	0.00000030134
Cucumis melo	CM3.5_scaffold00038	1	CH_cme_136	3	4	0.0000913451
Cucumis melo	CM3.5_scaffold00025	2	CH_cme_91	4	6	0.000000353725
Cucumis melo	CM3.5_scaffold00038	2	CH_cme_164	3	4	0.00010276
Cucumis melo	CM3.5_scaffold00022	3	CH_cme_260	3	4	0.000191646
Cucumis melo	CM3.5_scaffold00038	3	CH_cme_259	3	4	0.000191646
Fragaria vesca	LG7	1	CH_fve_185	3	5	0.0000714693
Fragaria vesca	LG7	2	CH_fve_216	3	5	0.0000714693
Glycine max	Gm12	1	CH_gma_223	3	3	0.0000271971
Glycine max	Gm12	2	CH_gma_270	3	3	0.0000271971
Glycine max	Gm02	3	CH_gma_349	3	3	0.0000481063
Glycine max	Gm12	3	CH_gma_348	3	3	0.0000481063
Lotus japonicus	chr2	3	CH_lja_96	4	22	0.0000120585
Manihot esculenta	scaffold06914	1	CH_mes_86	3	3	0.0000208104
Manihot esculenta	scaffold06914	2	CH_mes_100	3	3	0.0000208104
Manihot esculenta	scaffold06914	3	CH_mes_138	3	3	0.000023932
Oryza sativa ssp. japonica	7	3	CH_osa_182	4	6	0.000000597806
Ricinus communis	29854	3	CH_rco_47	6	11	0.000000000021766
Solanum lycopersicum	ch01	3	CH_sly_96	6	7	0.000000000000916501
Solanum lycopersicum	ch11	3	CH_sly_119	5	5	0.000000000111418
Solanum tuberosum	chr01	3	CH_stu_215	5	5	0.000000000120879
Solanum tuberosum	chr11	3	CH_stu_130	6	6	0.000000000000144534
Theobroma cacao	scaffold_9	1	CH_tca_93	4	5	0.0000000420613
Theobroma cacao	scaffold_9	2	CH_tca_104	4	5	0.0000000420613
Theobroma cacao	scaffold_9	3	CH_tca_149	4	5	0.0000000504722
Zea mays	1	1	CH_zma_154	3	4	0.0000907572
Zea mays	6	1	CH_zma_120	3	3	0.0000227032
Zea mays	6	2	CH_zma_123	3	3	0.0000227032
Zea mays	6	3	CH_zma_200	3	3	0.0000538365

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V