PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG3	1	CH_fve_135	4	36	0.00000792371
Malus domestica	3	1	CH_mdo_13	4	7	0.000000000154877
Malus domestica	3	2	CH_mdo_39	4	7	0.0000000245588
Malus domestica	3	3	CH_mdo_66	4	7	0.0000000315739
Solanum lycopersicum	ch12	3	CH_sly_315	3	3	0.0000056291
Solanum tuberosum	chr12	1	CH_stu_57	6	6	6.21881e-18
Solanum tuberosum	chr12	2	CH_stu_71	6	6	0.00000000000000181175
Solanum tuberosum	chr12	3	CH_stu_106	6	6	0.00000000000000181175

GO term	Description	Number of clusters
GO:0070207	protein homotrimerization	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V