PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0051213
Description: dioxygenase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_179	4	6	0.000157997
Arabidopsis lyrata	scaffold_1	2	CH_aly_262	4	6	0.000233969
Arabidopsis lyrata	scaffold_1	3	CH_aly_347	4	6	0.000433748
Arabidopsis thaliana	1	1	CH_ath_189	5	9	0.0000105235
Arabidopsis thaliana	1	2	CH_ath_227	5	9	0.0000105235
Arabidopsis thaliana	1	3	CH_ath_246	5	9	0.0000142098
Brassica rapa	A09	1	CH_bra_176	4	6	0.000652006
Brassica rapa	A10	1	CH_bra_153	4	5	0.000218333
Brassica rapa	A09	2	CH_bra_308	4	6	0.00095149
Brassica rapa	A10	2	CH_bra_238	4	5	0.000318765
Brassica rapa	A09	3	CH_bra_133	5	6	0.00000382188
Brassica rapa	A10	3	CH_bra_297	4	5	0.000463483
Capsella rubella	scaffold_1	1	CH_cru_175	4	5	0.000141916
Capsella rubella	scaffold_1	2	CH_cru_254	4	5	0.000217634
Capsella rubella	scaffold_1	3	CH_cru_320	4	5	0.000274367
Carica papaya	supercontig_44	1	CH_cpa_82	7	45	0.0000356884
Chlamydomonas reinhardtii	chromosome_16	3	CH_cre_111	3	3	0.000915852
Chlamydomonas reinhardtii	chromosome_16	9	CH_cre_12	3	3	0.000548338
Citrullus lanatus	Chr5	4	CH_cla_18	10	63	0.0000000348859
Citrullus lanatus	Chr5	5	CH_cla_19	10	63	0.0000000931701
Citrullus lanatus	Chr5	6	CH_cla_29	10	63	0.000000198867
Eucalyptus grandis	scaffold_3	6	CH_egr_283	10	76	0.000086246
Fragaria vesca	LG6	3	CH_fve_40	9	13	0.000000000000811484
Glycine max	Gm18	3	CH_gma_344	5	7	0.000040024
Glycine max	Gm08	4	CH_gma_66	13	202	0.000120965
Glycine max	Gm08	6	CH_gma_72	15	202	0.00000883039
Gossypium raimondii	Chr13	2	CH_gra_153	9	45	0.0000016875
Gossypium raimondii	Chr13	3	CH_gra_179	9	45	0.00000293365
Gossypium raimondii	Chr02	5	CH_gra_69	10	89	0.0000527218
Manihot esculenta	scaffold10563	6	CH_mes_22	10	76	0.0000177721
Medicago truncatula	chr5	3	CH_mtr_486	7	30	0.0000102159
Oryza sativa ssp. japonica	8	6	CH_osa_116	11	190	0.00000363492
Ricinus communis	29693	6	CH_rco_48	10	106	0.0000881774
Solanum lycopersicum	ch01	1	CH_sly_257	5	8	0.0000309414
Solanum lycopersicum	ch01	2	CH_sly_282	5	8	0.0000329004
Solanum lycopersicum	ch01	3	CH_sly_425	5	8	0.0000662926
Solanum lycopersicum	ch10	9	CH_sly_20	5	20	0.000312496
Solanum tuberosum	chr01	1	CH_stu_158	8	13	0.000000000589839
Solanum tuberosum	chr01	2	CH_stu_172	8	13	0.000000000953493
Solanum tuberosum	chr01	3	CH_stu_99	11	13	4.48485e-16
Solanum tuberosum	chr01	6	CH_stu_71	11	13	4.48485e-16
Theobroma cacao	scaffold_7	5	CH_tca_57	12	142	0.00000366007
Theobroma cacao	scaffold_7	6	CH_tca_85	12	142	0.0000174614

Available child term results

GO term	Description	Number of clusters
GO:0003868	4-hydroxyphenylpyruvate dioxygenase activity	15
GO:0004411	homogentisate 1,2-dioxygenase activity	6
GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	38
GO:0016165	linoleate 13S-lipoxygenase activity	77
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	55
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	426
GO:0016707	gibberellin 3-beta-dioxygenase activity	9
GO:0016708	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor	3
GO:0045431	flavonol synthase activity	3
GO:0045486	naringenin 3-dioxygenase activity	4
GO:0045544	gibberellin 20-oxidase activity	2
GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	4
GO:0050313	sulfur dioxygenase activity	2
GO:0050589	leucocyanidin oxygenase activity	3
GO:1990136	linoleate 9S-lipoxygenase activity	18

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V