PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_6	4	CH_cru_41	10	157	0.000449113
Gossypium raimondii	Chr05	5	CH_gra_85	10	116	0.000782856

GO term	Description	Number of clusters
GO:0006086	acetyl-CoA biosynthetic process from pyruvate	3
GO:0006556	S-adenosylmethionine biosynthetic process	3
GO:0006741	NADP biosynthetic process	20
GO:0006744	ubiquinone biosynthetic process	1
GO:0006760	folic acid-containing compound metabolic process	6
GO:0006784	heme a biosynthetic process	3
GO:0006788	heme oxidation	1
GO:0009051	pentose-phosphate shunt, oxidative branch	2
GO:0009052	pentose-phosphate shunt, non-oxidative branch	3
GO:0009234	menaquinone biosynthetic process	2
GO:0009435	NAD biosynthetic process	1
GO:0010024	phytochromobilin biosynthetic process	2
GO:0015996	chlorophyll catabolic process	10
GO:0019295	coenzyme M biosynthetic process	1
GO:0019354	siroheme biosynthetic process	1
GO:0019358	nicotinate nucleotide salvage	2
GO:0042372	phylloquinone biosynthetic process	2
GO:0046443	FAD metabolic process	1
GO:0046496	nicotinamide nucleotide metabolic process	3
GO:0046900	tetrahydrofolylpolyglutamate metabolic process	6
GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	4
GO:0048034	heme O biosynthetic process	5
GO:2001295	malonyl-CoA biosynthetic process	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V