PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00064	3	CH_atr_124	3	3	0.000000187407
Carica papaya	supercontig_1	1	CH_cpa_177	2	3	0.000873673
Carica papaya	supercontig_1	2	CH_cpa_225	2	3	0.000873673
Carica papaya	supercontig_170	3	CH_cpa_23	5	6	0.000000000000223882
Citrullus lanatus	Chr7	3	CH_cla_102	3	3	0.000000217339
Fragaria vesca	LG1	3	CH_fve_407	2	2	0.000598784
Fragaria vesca	LG6	3	CH_fve_406	2	2	0.000598784
Glycine max	Gm02	3	CH_gma_552	2	2	0.000777001
Medicago truncatula	chr4	1	CH_mtr_488	2	2	0.000306786
Medicago truncatula	chr7	9	CH_mtr_18	2	2	0.000198557
Populus trichocarpa	Chr04	3	CH_ptr_480	2	2	0.000298812

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V