PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	2	CH_ath_346	4	9	0.000321671
Arabidopsis thaliana	2	3	CH_ath_367	4	9	0.000321671
Manihot esculenta	scaffold10689	2	CH_mes_33	4	4	0.00000000256797
Manihot esculenta	scaffold10689	3	CH_mes_41	4	4	0.00000000256797
Populus trichocarpa	Chr10	2	CH_ptr_132	4	4	0.00000000221799
Populus trichocarpa	Chr10	3	CH_ptr_170	4	4	0.00000000221799
Ricinus communis	29814	2	CH_rco_116	3	3	0.0000031823
Ricinus communis	29814	3	CH_rco_152	3	3	0.0000031823
Theobroma cacao	scaffold_10r	2	CH_tca_168	3	3	0.00000199375
Theobroma cacao	scaffold_10r	3	CH_tca_216	3	3	0.00000199375

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V