PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG3	2	CH_fve_295	2	2	0.000359271
Fragaria vesca	LG3	3	CH_fve_376	2	2	0.000359271
Lotus japonicus	chr3	2	CH_lja_149	2	2	0.000403361
Lotus japonicus	chr3	3	CH_lja_187	2	2	0.000403361
Malus domestica	10	2	CH_mdo_258	2	2	0.000461585
Malus domestica	5	2	CH_mdo_257	2	2	0.000461585
Malus domestica	10	3	CH_mdo_349	2	2	0.000461585
Malus domestica	5	3	CH_mdo_348	2	2	0.000461585
Thellungiella parvula	ch2-4	2	CH_tpa_226	2	2	0.000794691
Thellungiella parvula	ch2-4	3	CH_tpa_262	2	2	0.000794691

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V