PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0050662
Description: coenzyme binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	1	CH_atr_132	6	13	0.0000241105
Amborella trichopoda	scaffold00025	1	CH_atr_101	5	5	0.00000163937
Amborella trichopoda	scaffold00022	2	CH_atr_136	6	13	0.0000317714
Amborella trichopoda	scaffold00025	2	CH_atr_104	6	9	0.00000160687
Amborella trichopoda	scaffold00011	3	CH_atr_205	6	10	0.0000164188
Amborella trichopoda	scaffold00022	3	CH_atr_155	7	13	0.00000157723
Amborella trichopoda	scaffold00025	3	CH_atr_187	6	9	0.00000663608
Amborella trichopoda	scaffold00153	3	CH_atr_329	4	4	0.000559039
Arabidopsis lyrata	scaffold_1	1	CH_aly_164	7	20	0.0000780449
Arabidopsis lyrata	scaffold_1	2	CH_aly_230	7	20	0.0000965454
Arabidopsis lyrata	scaffold_1	3	CH_aly_276	7	20	0.000152224
Arabidopsis lyrata	scaffold_8	4	CH_aly_10	10	16	0.0000000000144913
Beta vulgaris	Bvchr4.sca001	1	CH_bvu_35	8	9	0.0000000000590186
Beta vulgaris	Bvchr4.sca001	2	CH_bvu_41	8	9	0.0000000000673699
Beta vulgaris	Bvchr4.sca001	3	CH_bvu_27	9	9	0.000000000000190475
Beta vulgaris	Bvchr4.sca001	4	CH_bvu_21	10	48	0.0000037546
Beta vulgaris	Bvchr4.sca001	5	CH_bvu_27	10	48	0.00000440439
Beta vulgaris	Bvchr4.sca001	6	CH_bvu_16	10	16	0.0000000000178794
Chlamydomonas reinhardtii	chromosome_12	1	CH_cre_69	4	5	0.000702577
Chlamydomonas reinhardtii	chromosome_12	2	CH_cre_78	4	5	0.000827334
Citrullus lanatus	Chr10	1	CH_cla_94	5	5	0.00000606111
Citrullus lanatus	Chr11	4	CH_cla_14	10	24	0.00000000241514
Citrullus lanatus	Chr11	5	CH_cla_14	10	24	0.00000000352224
Citrullus lanatus	Chr11	6	CH_cla_23	10	24	0.0000000147998
Eucalyptus grandis	scaffold_5	1	CH_egr_92	11	12	8.24877e-17
Eucalyptus grandis	scaffold_7	1	CH_egr_162	10	16	0.00000000000498691
Eucalyptus grandis	scaffold_5	2	CH_egr_124	11	12	1.21182e-16
Eucalyptus grandis	scaffold_7	2	CH_egr_191	11	19	0.00000000000071145
Eucalyptus grandis	scaffold_2	3	CH_egr_694	5	6	0.0000697062
Eucalyptus grandis	scaffold_5	3	CH_egr_151	11	12	5.67257e-16
Eucalyptus grandis	scaffold_7	3	CH_egr_240	11	19	0.00000000000329456
Eucalyptus grandis	scaffold_5	4	CH_egr_76	11	12	8.24877e-17
Eucalyptus grandis	scaffold_7	4	CH_egr_112	10	16	0.00000000000498691
Eucalyptus grandis	scaffold_5	5	CH_egr_83	11	12	1.21182e-16
Eucalyptus grandis	scaffold_7	5	CH_egr_114	11	19	0.00000000000071145
Eucalyptus grandis	scaffold_5	6	CH_egr_103	11	12	5.67257e-16
Eucalyptus grandis	scaffold_7	6	CH_egr_141	11	19	0.00000000000329456
Fragaria vesca	LG7	1	CH_fve_197	5	8	0.00012588
Fragaria vesca	LG7	2	CH_fve_228	5	8	0.000145147
Fragaria vesca	LG7	3	CH_fve_357	5	8	0.000342051
Lotus japonicus	chr5	1	CH_lja_71	5	11	0.0000548075
Lotus japonicus	chr4	4	CH_lja_13	10	135	0.0000940693
Malus domestica	2	1	CH_mdo_116	7	24	0.0000270526
Malus domestica	2	2	CH_mdo_135	7	24	0.0000304598
Malus domestica	2	3	CH_mdo_82	9	26	0.000000169047
Malus domestica	7	3	CH_mdo_262	9	53	0.000186362
Malus domestica	2	5	CH_mdo_50	10	104	0.000667088
Malus domestica	2	6	CH_mdo_23	10	42	0.000000712354
Malus domestica	7	6	CH_mdo_40	15	187	0.0000729621
Manihot esculenta	scaffold06659	3	CH_mes_113	6	8	0.00000412317
Manihot esculenta	scaffold11106	3	CH_mes_51	9	17	0.00000000848646
Manihot esculenta	scaffold11106	6	CH_mes_12	10	26	0.0000000227812
Medicago truncatula	chr7	1	CH_mtr_206	7	14	0.0000000475924
Medicago truncatula	chr7	2	CH_mtr_246	7	14	0.0000000624066
Medicago truncatula	chr7	3	CH_mtr_350	7	14	0.000000281539
Oryza sativa ssp. japonica	4	1	CH_osa_229	6	15	0.0000185921
Oryza sativa ssp. japonica	9	1	CH_osa_109	8	18	0.00000000649313
Oryza sativa ssp. japonica	4	2	CH_osa_232	6	15	0.0000222436
Oryza sativa ssp. japonica	9	2	CH_osa_116	8	18	0.00000000825466
Oryza sativa ssp. japonica	4	3	CH_osa_187	7	15	0.000000744705
Oryza sativa ssp. japonica	9	3	CH_osa_65	8	8	0.000000000000976321
Oryza sativa ssp. japonica	6	6	CH_osa_145	11	108	0.000083237
Oryza sativa ssp. japonica	9	6	CH_osa_55	10	18	0.00000000000254754
Ostreococcus lucimarinus	Chr_18	1	CH_olu_26	10	68	0.000680235
Ostreococcus lucimarinus	Chr_18	4	CH_olu_4	10	68	0.000680235
Populus trichocarpa	Chr01	4	CH_ptr_98	11	63	0.000079039
Populus trichocarpa	Chr01	6	CH_ptr_63	11	15	0.00000000000126159
Prunus persica	scaffold_2	3	CH_ppe_160	8	12	0.0000000177994
Prunus persica	scaffold_3	3	CH_ppe_525	5	8	0.000782249
Ricinus communis	29864	1	CH_rco_180	4	4	0.000409366
Ricinus communis	30170	1	CH_rco_179	4	4	0.000409366
Ricinus communis	29864	2	CH_rco_182	6	14	0.000199384
Ricinus communis	30170	2	CH_rco_214	4	4	0.000481184
Ricinus communis	29864	3	CH_rco_269	6	14	0.000467298
Ricinus communis	30170	3	CH_rco_297	4	4	0.000854721
Solanum lycopersicum	ch10	3	CH_sly_352	5	5	0.0000169023
Solanum tuberosum	chr01	1	CH_stu_303	5	5	0.00000837974
Solanum tuberosum	chr01	2	CH_stu_334	5	5	0.00000954193
Solanum tuberosum	chr01	4	CH_stu_113	13	95	0.0000042696
Solanum tuberosum	chr01	5	CH_stu_103	14	95	0.000000412071
Vitis vinifera	chr13_random	1	CH_vvi_264	6	14	0.00026561
Vitis vinifera	chr18	1	CH_vvi_294	4	4	0.000634559
Vitis vinifera	chr13_random	2	CH_vvi_315	6	14	0.000339698
Vitis vinifera	chr18	2	CH_vvi_347	4	4	0.000749107
Vitis vinifera	chr13	3	CH_vvi_320	9	32	0.0000523023
Vitis vinifera	chr13_random	3	CH_vvi_119	10	17	0.000000000758344
Vitis vinifera	chr3	3	CH_vvi_311	5	5	0.0000349046
Vitis vinifera	chr10	4	CH_vvi_49	10	23	0.00000000211601
Vitis vinifera	chr18	4	CH_vvi_67	11	53	0.00000123474
Vitis vinifera	chr10	5	CH_vvi_48	10	23	0.00000000319591
Vitis vinifera	chr18	5	CH_vvi_65	11	53	0.00000191859
Vitis vinifera	chr13_random	6	CH_vvi_67	10	17	0.000000000758344
Zea mays	7	1	CH_zma_123	5	6	0.0000265667
Zea mays	7	2	CH_zma_130	5	6	0.0000318266
Zea mays	7	3	CH_zma_218	5	6	0.000103983
Zea mays	9	3	CH_zma_140	6	8	0.0000064158

Available child term results

GO term	Description	Number of clusters
GO:0000062	fatty-acyl-CoA binding	1
GO:0010181	FMN binding	71
GO:0030976	thiamine pyrophosphate binding	15
GO:0043546	molybdopterin cofactor binding	9
GO:0050660	flavin adenine dinucleotide binding	43
GO:0050661	NADP binding	7
GO:0051287	NAD binding	53
GO:0070401	NADP+ binding	25
GO:0070403	NAD+ binding	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V