PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Gossypium raimondii	Chr11	2	CH_gra_22	7	7	2.13099e-19
Gossypium raimondii	Chr11	3	CH_gra_29	7	7	2.13099e-19
Manihot esculenta	scaffold10954	2	CH_mes_90	3	4	0.0000118873
Manihot esculenta	scaffold10954	3	CH_mes_125	3	4	0.0000118873
Populus trichocarpa	Chr02	2	CH_ptr_42	7	13	2.35647e-17
Populus trichocarpa	Chr02	3	CH_ptr_49	7	13	2.35647e-17
Theobroma cacao	scaffold_8	2	CH_tca_41	5	6	0.000000000000769703
Theobroma cacao	scaffold_8	3	CH_tca_58	5	6	0.000000000000769703
Vitis vinifera	chr18	2	CH_vvi_222	3	8	0.0000166186
Vitis vinifera	chr18	3	CH_vvi_289	3	8	0.0000166186

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V