PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_97	2	CH_cpa_93	3	3	0.0000286158
Carica papaya	supercontig_97	3	CH_cpa_160	3	3	0.0000286158
Eucalyptus grandis	scaffold_9	2	CH_egr_114	7	7	2.10749e-17
Eucalyptus grandis	scaffold_9	3	CH_egr_131	7	7	2.10749e-17
Manihot esculenta	scaffold03241	2	CH_mes_115	3	3	0.0000737284
Manihot esculenta	scaffold03241	3	CH_mes_159	3	3	0.0000737284
Prunus persica	scaffold_4	2	CH_ppe_262	3	3	0.0000316463
Prunus persica	scaffold_4	3	CH_ppe_321	3	3	0.0000386615
Solanum lycopersicum	ch02	2	CH_sly_258	3	3	0.0000128383
Solanum lycopersicum	ch02	3	CH_sly_349	3	3	0.0000144431
Solanum tuberosum	chr02	2	CH_stu_347	3	3	0.0000159276
Solanum tuberosum	chr02	3	CH_stu_492	3	3	0.0000177654
Thellungiella parvula	ch6-6	2	CH_tpa_136	3	3	0.000125466
Thellungiella parvula	ch6-6	3	CH_tpa_164	3	3	0.000125466

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V