PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_8	2	CH_cru_13	13	13	9.12836e-20
Capsella rubella	scaffold_8	5	CH_cru_9	13	13	9.12836e-20
Eucalyptus grandis	scaffold_6	2	CH_egr_523	12	77	0.00000839765
Eucalyptus grandis	scaffold_6	2	CH_egr_455	6	7	0.000000925155
Fragaria vesca	LG7	3	CH_fve_382	4	4	0.000409688
Fragaria vesca	LG6	5	CH_fve_40	16	212	0.00000716643
Fragaria vesca	LG6	6	CH_fve_62	17	212	0.00000460233
Gossypium raimondii	Chr11	3	CH_gra_221	5	5	0.0000236064
Malus domestica	11	2	CH_mdo_60	7	16	0.000000151285
Malus domestica	11	3	CH_mdo_96	7	16	0.000000304047
Manihot esculenta	scaffold03741	3	CH_mes_91	10	35	0.000000752511
Manihot esculenta	scaffold03741	6	CH_mes_16	10	35	0.000000752511
Populus trichocarpa	Chr10	3	CH_ptr_346	5	5	0.0000231367
Populus trichocarpa	Chr16	5	CH_ptr_94	11	62	0.0000191906
Populus trichocarpa	Chr16	6	CH_ptr_121	11	62	0.0000470447
Prunus persica	scaffold_2	3	CH_ppe_331	5	6	0.0000564935
Solanum tuberosum	chr05	3	CH_stu_599	5	7	0.000162482
Theobroma cacao	scaffold_10r	3	CH_tca_424	4	4	0.000654186

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V