PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_9	3	CH_aly_53	5	5	0.000000000014156
Beta vulgaris	0269.scaffold00704	1	CH_bvu_133	3	3	0.0000283099
Beta vulgaris	0269.scaffold00704	2	CH_bvu_157	3	3	0.0000283099
Lotus japonicus	chr1	1	CH_lja_47	3	3	0.00000656925
Lotus japonicus	chr1	2	CH_lja_71	3	3	0.00000772853
Lotus japonicus	chr1	3	CH_lja_92	3	3	0.0000104403
Medicago truncatula	chr6	3	CH_mtr_534	3	3	0.000027671
Populus trichocarpa	Chr13	3	CH_ptr_128	5	5	0.0000000000790124
Solanum lycopersicum	ch10	1	CH_sly_247	4	8	0.0000179593
Solanum lycopersicum	ch10	2	CH_sly_267	4	8	0.0000192403
Solanum lycopersicum	ch08	3	CH_sly_552	3	3	0.000347128
Solanum tuberosum	chr01	3	CH_stu_639	3	3	0.000202567
Zea mays	chloroplast	2	CH_zma_5	13	19	5.12322e-30

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V