PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG3	2	CH_fve_262	4	34	0.000215511
Fragaria vesca	LG3	3	CH_fve_342	4	34	0.000215511
Glycine max	Gm12	2	CH_gma_98	4	25	0.00000000192163
Glycine max	Gm12	3	CH_gma_121	4	25	0.00000000192163
Gossypium raimondii	Chr02	2	CH_gra_175	3	3	0.000012525
Gossypium raimondii	Chr09	2	CH_gra_19	8	9	7.8232e-21
Gossypium raimondii	Chr02	3	CH_gra_210	3	3	0.000012525
Gossypium raimondii	Chr09	3	CH_gra_24	8	9	7.8232e-21
Manihot esculenta	scaffold09788	2	CH_mes_162	2	3	0.000284725
Manihot esculenta	scaffold09788	3	CH_mes_210	2	3	0.000284725
Solanum tuberosum	chr11	2	CH_stu_267	4	8	0.000000678624
Solanum tuberosum	chr11	3	CH_stu_374	4	8	0.000000678624
Thellungiella parvula	ch3-1	2	CH_tpa_40	3	3	0.00000000947339
Thellungiella parvula	ch3-1	3	CH_tpa_46	3	3	0.00000000947339
Theobroma cacao	scaffold_7	2	CH_tca_12	9	35	4.66501e-22

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V