PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0047134
Description: protein-disulfide reductase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00078	3	CH_atr_177	3	3	0.00000426351
Amborella trichopoda	scaffold00078	7	CH_atr_4	2	2	0.000519166
Amborella trichopoda	scaffold00078	8	CH_atr_10	2	2	0.000865276
Amborella trichopoda	scaffold00078	9	CH_atr_4	3	3	0.000000393086
Arabidopsis lyrata	scaffold_4	1	CH_aly_103	4	5	0.000000942382
Arabidopsis lyrata	scaffold_4	2	CH_aly_137	4	5	0.00000102089
Arabidopsis lyrata	scaffold_4	3	CH_aly_178	4	5	0.00000288925
Arabidopsis thaliana	1	1	CH_ath_143	5	7	0.000000978055
Arabidopsis thaliana	2	1	CH_ath_224	4	5	0.0000556923
Arabidopsis thaliana	2	1	CH_ath_48	7	10	0.0000000000959779
Arabidopsis thaliana	2	1	CH_ath_225	4	5	0.0000556923
Arabidopsis thaliana	3	1	CH_ath_223	4	7	0.0000556923
Arabidopsis thaliana	3	1	CH_ath_121	5	6	0.000000280426
Arabidopsis thaliana	4	1	CH_ath_176	8	59	0.00000611101
Arabidopsis thaliana	5	1	CH_ath_191	4	4	0.0000111763
Arabidopsis thaliana	5	1	CH_ath_226	4	5	0.0000556923
Arabidopsis thaliana	1	2	CH_ath_170	5	7	0.000000978055
Arabidopsis thaliana	2	2	CH_ath_258	4	5	0.0000556923
Arabidopsis thaliana	2	2	CH_ath_68	7	10	0.0000000000959779
Arabidopsis thaliana	2	2	CH_ath_257	4	5	0.0000556923
Arabidopsis thaliana	3	2	CH_ath_256	4	7	0.0000556923
Arabidopsis thaliana	3	2	CH_ath_155	5	6	0.000000280426
Arabidopsis thaliana	4	2	CH_ath_215	8	59	0.00000611101
Arabidopsis thaliana	5	2	CH_ath_228	4	4	0.0000111763
Arabidopsis thaliana	1	3	CH_ath_187	5	7	0.00000120086
Arabidopsis thaliana	2	3	CH_ath_295	4	5	0.0000655985
Arabidopsis thaliana	2	3	CH_ath_296	4	5	0.0000655985
Arabidopsis thaliana	2	3	CH_ath_76	7	10	0.000000000128175
Arabidopsis thaliana	3	3	CH_ath_169	5	6	0.00000034436
Arabidopsis thaliana	3	3	CH_ath_294	4	7	0.0000655985
Arabidopsis thaliana	4	3	CH_ath_231	8	59	0.00000845104
Arabidopsis thaliana	5	3	CH_ath_244	4	4	0.0000131662
Arabidopsis thaliana	4	4	CH_ath_79	10	157	0.000059662
Arabidopsis thaliana	4	5	CH_ath_96	10	157	0.000059662
Arabidopsis thaliana	4	6	CH_ath_110	10	157	0.000088513
Brassica rapa	A04	1	CH_bra_46	4	4	0.000000084423
Brassica rapa	A05	1	CH_bra_45	4	4	0.000000084423
Brassica rapa	A04	2	CH_bra_64	4	4	0.0000000916079
Brassica rapa	A03	3	CH_bra_229	3	3	0.00013969
Brassica rapa	A04	3	CH_bra_85	4	4	0.000000204494
Brassica rapa	A05	3	CH_bra_47	5	5	0.000000000294294
Capsella rubella	scaffold_4	1	CH_cru_118	4	4	0.00000481881
Capsella rubella	scaffold_5	1	CH_cru_119	4	4	0.00000481881
Capsella rubella	scaffold_6	1	CH_cru_137	6	27	0.0000170374
Capsella rubella	scaffold_4	2	CH_cru_167	4	4	0.0000050217
Capsella rubella	scaffold_5	2	CH_cru_168	4	4	0.0000050217
Capsella rubella	scaffold_6	2	CH_cru_182	6	27	0.0000181241
Capsella rubella	scaffold_4	3	CH_cru_196	4	4	0.00000544665
Capsella rubella	scaffold_5	3	CH_cru_197	4	4	0.00000544665
Capsella rubella	scaffold_6	4	CH_cru_46	10	248	0.000843016
Carica papaya	supercontig_12	1	CH_cpa_39	4	6	0.0000000979032
Carica papaya	supercontig_89	1	CH_cpa_14	7	22	0.000000000000217292
Carica papaya	supercontig_12	2	CH_cpa_43	4	6	0.0000000979032
Carica papaya	supercontig_89	2	CH_cpa_14	7	22	0.000000000000217292
Carica papaya	supercontig_12	3	CH_cpa_91	4	6	0.000000520044
Carica papaya	supercontig_189	3	CH_cpa_232	3	4	0.000129961
Carica papaya	supercontig_89	3	CH_cpa_15	8	13	3.5537e-17
Carica papaya	supercontig_189	9	CH_cpa_6	3	4	0.00000581584
Chlamydomonas reinhardtii	chromosome_2	3	CH_cre_43	3	8	0.0000106986
Citrullus lanatus	Chr9	1	CH_cla_67	4	6	0.0000000848273
Citrullus lanatus	Chr9	2	CH_cla_75	4	6	0.000000107441
Citrullus lanatus	Chr1	3	CH_cla_163	3	3	0.0000356001
Citrullus lanatus	Chr4	3	CH_cla_164	3	3	0.0000356001
Citrullus lanatus	Chr9	3	CH_cla_63	5	6	0.000000000231959
Citrus sinensis	scaffold00024	1	CH_csi_119	4	12	0.000230361
Citrus sinensis	scaffold00063	1	CH_csi_59	4	4	0.000000472026
Citrus sinensis	scaffold00024	2	CH_csi_150	4	12	0.000230361
Citrus sinensis	scaffold00063	2	CH_csi_63	4	4	0.000000472026
Citrus sinensis	scaffold00101	2	CH_csi_149	3	3	0.000214486
Citrus sinensis	scaffold00024	3	CH_csi_187	4	12	0.000230361
Citrus sinensis	scaffold00063	3	CH_csi_79	4	4	0.000000472026
Citrus sinensis	scaffold00101	3	CH_csi_186	3	3	0.000214486
Cucumis melo	CM3.5_scaffold00048	1	CH_cme_37	5	5	0.00000000000220666
Cucumis melo	CM3.5_scaffold01596	1	CH_cme_162	3	7	0.000250553
Cucumis melo	CM3.5_scaffold00048	2	CH_cme_35	5	5	0.00000000000299476
Cucumis melo	CM3.5_scaffold00002	3	CH_cme_64	5	6	0.000000000183362
Cucumis melo	CM3.5_scaffold00048	3	CH_cme_35	6	6	0.0000000000000280983
Eucalyptus grandis	scaffold_5	1	CH_egr_585	3	10	0.000416863
Eucalyptus grandis	scaffold_8	1	CH_egr_434	3	4	0.0000139235
Eucalyptus grandis	scaffold_5	3	CH_egr_246	6	10	0.00000000000745699
Glycine max	Gm19	3	CH_gma_291	3	4	0.00000795761
Gossypium raimondii	Chr05	1	CH_gra_17	16	63	1.03337e-22
Gossypium raimondii	Chr05	1	CH_gra_97	5	5	0.00000000714135
Gossypium raimondii	Chr05	1	CH_gra_20	12	22	4.69208e-21
Gossypium raimondii	Chr10	1	CH_gra_11	18	59	1.13366e-27
Gossypium raimondii	Chr11	1	CH_gra_172	5	16	0.0000303992
Gossypium raimondii	Chr11	1	CH_gra_140	7	44	0.00000191378
Gossypium raimondii	Chr13	1	CH_gra_18	15	50	2.59852e-22
Gossypium raimondii	scaffold_15	1	CH_gra_254	5	25	0.000362043
Gossypium raimondii	Chr05	2	CH_gra_18	12	22	5.26532e-21
Gossypium raimondii	Chr05	2	CH_gra_104	5	5	0.00000000748141
Gossypium raimondii	Chr10	2	CH_gra_9	18	59	1.35405e-27
Gossypium raimondii	Chr11	2	CH_gra_189	5	16	0.000031839
Gossypium raimondii	Chr13	2	CH_gra_16	15	50	3.00616e-22
Gossypium raimondii	Chr05	3	CH_gra_28	12	22	3.20524e-20
Gossypium raimondii	Chr05	3	CH_gra_130	5	5	0.0000000155404
Gossypium raimondii	Chr10	3	CH_gra_11	20	59	7.94454e-31
Gossypium raimondii	Chr11	3	CH_gra_260	5	16	0.0000658607
Gossypium raimondii	Chr11	3	CH_gra_46	14	66	0.00000000000000202572
Gossypium raimondii	Chr13	3	CH_gra_23	15	50	2.93896e-21
Gossypium raimondii	scaffold_15	3	CH_gra_200	6	25	0.00000850592
Gossypium raimondii	Chr05	4	CH_gra_7	29	215	8.38607e-36
Gossypium raimondii	Chr10	4	CH_gra_14	18	59	1.13366e-27
Gossypium raimondii	Chr11	4	CH_gra_40	13	150	0.0000000000253354
Gossypium raimondii	Chr13	4	CH_gra_19	15	50	2.59852e-22
Gossypium raimondii	Chr05	5	CH_gra_9	27	205	1.3755e-32
Gossypium raimondii	Chr10	5	CH_gra_11	18	59	1.35405e-27
Gossypium raimondii	Chr11	5	CH_gra_39	13	150	0.0000000000286278
Gossypium raimondii	Chr13	5	CH_gra_15	15	50	3.00616e-22
Gossypium raimondii	Chr10	6	CH_gra_14	20	59	7.94454e-31
Gossypium raimondii	Chr11	6	CH_gra_23	20	172	1.39255e-20
Gossypium raimondii	Chr13	6	CH_gra_22	15	50	2.93896e-21
Medicago truncatula	chr7	1	CH_mtr_198	4	16	0.0000000330731
Medicago truncatula	chr7	2	CH_mtr_251	4	16	0.0000000779351
Medicago truncatula	chr7	3	CH_mtr_367	4	16	0.000000481355
Oryza sativa ssp. japonica	7	1	CH_osa_12	9	23	1.52176e-23
Oryza sativa ssp. japonica	7	2	CH_osa_13	9	23	3.47752e-23
Oryza sativa ssp. japonica	7	3	CH_osa_15	10	23	3.3584e-23
Oryza sativa ssp. japonica	8	3	CH_osa_210	4	12	0.000002116
Oryza sativa ssp. japonica	7	6	CH_osa_16	10	23	3.3584e-23
Oryza sativa ssp. japonica	7	7	CH_osa_12	4	14	0.00000000403256
Oryza sativa ssp. japonica	7	8	CH_osa_11	4	14	0.00000000806402
Oryza sativa ssp. japonica	7	9	CH_osa_8	5	14	0.000000000227219
Populus trichocarpa	Chr16	1	CH_ptr_27	10	32	1.71033e-20
Populus trichocarpa	Chr16	2	CH_ptr_30	10	32	2.56421e-20
Populus trichocarpa	Chr10	3	CH_ptr_285	4	7	0.0000023074
Populus trichocarpa	Chr10	3	CH_ptr_33	9	10	7.30812e-22
Populus trichocarpa	Chr16	3	CH_ptr_36	11	32	8.08601e-21
Populus trichocarpa	Chr16	4	CH_ptr_25	10	32	1.71033e-20
Populus trichocarpa	Chr16	5	CH_ptr_26	10	32	2.56421e-20
Populus trichocarpa	Chr16	6	CH_ptr_29	11	32	8.08601e-21
Prunus persica	scaffold_7	1	CH_ppe_99	7	44	0.00000000341402
Solanum lycopersicum	ch01	1	CH_sly_17	9	11	2.69095e-24
Solanum lycopersicum	ch01	2	CH_sly_17	9	11	4.55367e-24
Solanum lycopersicum	ch01	3	CH_sly_17	10	11	1.71779e-27
Solanum lycopersicum	ch01	6	CH_sly_17	10	11	1.71779e-27
Solanum tuberosum	chr01	1	CH_stu_2	18	23	2.35528e-49
Solanum tuberosum	chr10	1	CH_stu_428	3	5	0.000218269
Solanum tuberosum	chr01	2	CH_stu_1	18	23	5.38278e-49
Solanum tuberosum	chr10	2	CH_stu_488	3	5	0.000240839
Solanum tuberosum	chr01	3	CH_stu_3	20	23	2.55402e-54
Solanum tuberosum	chr09	3	CH_stu_355	4	5	0.000000252763
Solanum tuberosum	chr01	4	CH_stu_2	18	23	2.35528e-49
Solanum tuberosum	chr01	5	CH_stu_2	18	23	5.38278e-49
Solanum tuberosum	chr01	6	CH_stu_4	20	23	2.55402e-54
Thellungiella parvula	ch4-6	1	CH_tpa_90	3	5	0.0000772277
Thellungiella parvula	ch4-6	3	CH_tpa_73	4	5	0.000000132032
Theobroma cacao	scaffold_10r	1	CH_tca_24	9	16	4.2347e-16
Theobroma cacao	scaffold_4	1	CH_tca_201	4	7	0.000028605
Theobroma cacao	scaffold_5	1	CH_tca_264	3	3	0.000365247
Theobroma cacao	scaffold_5	1	CH_tca_81	6	14	0.0000000117517
Theobroma cacao	scaffold_10r	2	CH_tca_24	9	16	4.85844e-16
Theobroma cacao	scaffold_4	2	CH_tca_221	4	7	0.0000303361
Theobroma cacao	scaffold_5	2	CH_tca_90	6	14	0.0000000128504
Theobroma cacao	scaffold_5	2	CH_tca_318	3	3	0.000381601
Theobroma cacao	scaffold_10r	3	CH_tca_40	9	16	0.00000000000000425187
Theobroma cacao	scaffold_5	3	CH_tca_443	3	3	0.000764987
Theobroma cacao	scaffold_5	3	CH_tca_257	4	5	0.0000110568
Theobroma cacao	scaffold_5	3	CH_tca_17	11	17	3.3034e-20
Theobroma cacao	scaffold_5	4	CH_tca_49	10	204	0.0000014683
Theobroma cacao	scaffold_10r	5	CH_tca_28	10	78	0.000000000113128
Theobroma cacao	scaffold_5	6	CH_tca_17	11	17	3.3034e-20
Vitis vinifera	chr1	3	CH_vvi_172	4	9	0.0000000795021

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V