PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

No results found

GO term	Description	Number of clusters
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1
GO:0000256	allantoin catabolic process	4
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	6
GO:0006145	purine nucleobase catabolic process	4
GO:0006148	inosine catabolic process	2
GO:0006154	adenosine catabolic process	18
GO:0006184	GTP catabolic process	6
GO:0006200	ATP catabolic process	7
GO:0006208	pyrimidine nucleobase catabolic process	2
GO:0006308	DNA catabolic process	16
GO:0006562	proline catabolic process	3
GO:0006569	tryptophan catabolic process	20
GO:0006788	heme oxidation	1
GO:0009166	nucleotide catabolic process	1
GO:0009972	cytidine deamination	15
GO:0015996	chlorophyll catabolic process	10
GO:0016075	rRNA catabolic process	1
GO:0032312	regulation of ARF GTPase activity	3
GO:0032313	regulation of Rab GTPase activity	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V