PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_5	2	CH_egr_67	24	78	4.13196e-21
Eucalyptus grandis	scaffold_8	2	CH_egr_125	14	22	1.24225e-16
Eucalyptus grandis	scaffold_5	3	CH_egr_86	24	78	4.13196e-21
Eucalyptus grandis	scaffold_8	3	CH_egr_141	14	22	1.24225e-16
Eucalyptus grandis	scaffold_5	5	CH_egr_45	29	108	2.90014e-24
Eucalyptus grandis	scaffold_8	5	CH_egr_84	14	22	1.24225e-16
Eucalyptus grandis	scaffold_5	6	CH_egr_48	29	108	2.90014e-24
Eucalyptus grandis	scaffold_8	6	CH_egr_98	14	22	1.24225e-16
Medicago truncatula	chr1	2	CH_mtr_700	4	5	0.000917211
Medicago truncatula	chr1	3	CH_mtr_875	4	5	0.000917211
Oryza sativa ssp. japonica	5	2	CH_osa_422	7	45	0.000981411
Oryza sativa ssp. japonica	5	3	CH_osa_492	7	45	0.000981411
Prunus persica	scaffold_1	2	CH_ppe_417	4	4	0.000971253
Prunus persica	scaffold_1	3	CH_ppe_531	4	4	0.000971253
Theobroma cacao	scaffold_4	2	CH_tca_264	5	7	0.000139848
Theobroma cacao	scaffold_4	3	CH_tca_326	5	7	0.000139848

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V