Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0046394
- Description
- carboxylic acid biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_10 | 5 | CH_egr_263 | 14 | 134 | 0.000202148 |
Eucalyptus grandis | scaffold_10 | 6 | CH_egr_309 | 14 | 134 | 0.000471167 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000162 | tryptophan biosynthetic process | 1 |
GO:0006065 | UDP-glucuronate biosynthetic process | 5 |
GO:0006529 | asparagine biosynthetic process | 4 |
GO:0006535 | cysteine biosynthetic process from serine | 12 |
GO:0006542 | glutamine biosynthetic process | 8 |
GO:0006556 | S-adenosylmethionine biosynthetic process | 3 |
GO:0006571 | tyrosine biosynthetic process | 9 |
GO:0006633 | fatty acid biosynthetic process | 40 |
GO:0006636 | unsaturated fatty acid biosynthetic process | 3 |
GO:0008612 | peptidyl-lysine modification to hypusine | 3 |
GO:0008652 | cellular amino acid biosynthetic process | 5 |
GO:0009067 | aspartate family amino acid biosynthetic process | 1 |
GO:0009098 | leucine biosynthetic process | 1 |
GO:0009423 | chorismate biosynthetic process | 1 |
GO:0009697 | salicylic acid biosynthetic process | 42 |
GO:0010371 | regulation of gibberellin biosynthetic process | 2 |
GO:0010373 | negative regulation of gibberellin biosynthetic process | 2 |
GO:0019281 | L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine | 1 |
GO:0019370 | leukotriene biosynthetic process | 7 |
GO:0019509 | L-methionine salvage from methylthioadenosine | 14 |
GO:0030418 | nicotianamine biosynthetic process | 11 |
GO:0030497 | fatty acid elongation | 4 |
GO:0031408 | oxylipin biosynthetic process | 12 |
GO:0033587 | shikimate biosynthetic process | 4 |
GO:0042318 | penicillin biosynthetic process | 2 |
GO:0042450 | arginine biosynthetic process via ornithine | 1 |
GO:0046901 | tetrahydrofolylpolyglutamate biosynthetic process | 4 |
GO:0071266 | 'de novo' L-methionine biosynthetic process | 9 |
GO:0080142 | regulation of salicylic acid biosynthetic process | 7 |
GO:0090359 | negative regulation of abscisic acid biosynthetic process | 6 |
GO:1901607 | alpha-amino acid biosynthetic process | 11 |
GO:2000082 | regulation of L-ascorbic acid biosynthetic process | 2 |
GO:2000083 | negative regulation of L-ascorbic acid biosynthetic process | 40 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |