PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	2	CH_aly_232	3	3	0.000110169
Arabidopsis lyrata	scaffold_5	3	CH_aly_270	3	3	0.000124527
Eucalyptus grandis	scaffold_10	2	CH_egr_347	4	4	0.0000000122522
Eucalyptus grandis	scaffold_10	3	CH_egr_404	4	4	0.0000000122522
Prunus persica	scaffold_6	2	CH_ppe_155	4	6	0.000000123176
Prunus persica	scaffold_6	3	CH_ppe_187	4	6	0.000000123176
Ricinus communis	29986	2	CH_rco_35	5	6	0.00000000011014
Ricinus communis	29986	3	CH_rco_52	5	6	0.00000000011014
Solanum tuberosum	chr09	2	CH_stu_365	3	3	0.0000241151
Solanum tuberosum	chr09	3	CH_stu_511	3	3	0.0000241151
Theobroma cacao	scaffold_1	2	CH_tca_210	3	3	0.0000160337
Theobroma cacao	scaffold_1	3	CH_tca_266	3	3	0.0000160337

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V