Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0046274
- Description
- lignin catabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Beta vulgaris | Bvchr2.sca001 | 1 | CH_bvu_122 | 3 | 3 | 0.0000135535 |
Beta vulgaris | Bvchr7.sca021 | 1 | CH_bvu_64 | 4 | 5 | 0.0000000523226 |
Citrus sinensis | scaffold00083 | 1 | CH_csi_114 | 3 | 6 | 0.000146243 |
Citrus sinensis | scaffold00083 | 2 | CH_csi_145 | 3 | 6 | 0.000146243 |
Citrus sinensis | scaffold00014 | 3 | CH_csi_90 | 4 | 7 | 0.000000973902 |
Citrus sinensis | scaffold00083 | 3 | CH_csi_229 | 3 | 6 | 0.000533862 |
Fragaria vesca | LG2 | 1 | CH_fve_44 | 7 | 37 | 0.000000000304766 |
Glycine max | Gm07 | 1 | CH_gma_235 | 3 | 3 | 0.0000378345 |
Glycine max | Gm18 | 1 | CH_gma_140 | 4 | 6 | 0.000000482314 |
Gossypium raimondii | Chr03 | 1 | CH_gra_233 | 3 | 4 | 0.000226654 |
Oryza sativa ssp. japonica | 1 | 1 | CH_osa_123 | 6 | 71 | 0.0000000323595 |
Oryza sativa ssp. japonica | 5 | 1 | CH_osa_227 | 3 | 4 | 0.0000175649 |
Prunus persica | scaffold_8 | 1 | CH_ppe_26 | 9 | 26 | 3.19965e-17 |
Ricinus communis | 29703 | 1 | CH_rco_90 | 4 | 8 | 0.000000607117 |
Solanum tuberosum | chr09 | 1 | CH_stu_502 | 3 | 9 | 0.000824241 |
Theobroma cacao | scaffold_5 | 1 | CH_tca_117 | 4 | 7 | 0.000000242975 |
Theobroma cacao | scaffold_8 | 1 | CH_tca_210 | 3 | 4 | 0.00004292 |
Vitis vinifera | chr8 | 1 | CH_vvi_185 | 4 | 9 | 0.00000742384 |
Vitis vinifera | chr18 | 6 | CH_vvi_44 | 17 | 202 | 1.25364e-17 |
Zea mays | 3 | 1 | CH_zma_63 | 5 | 41 | 0.000000220317 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |