PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0045087
Description: innate immune response

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	1	CH_aly_20	9	14	0.000000000000045426
Arabidopsis lyrata	scaffold_2	1	CH_aly_210	5	18	0.000501812
Arabidopsis lyrata	scaffold_8	1	CH_aly_52	6	7	0.00000000190888
Arabidopsis lyrata	scaffold_8	7	CH_aly_2	5	6	0.0000000101796
Arabidopsis lyrata	scaffold_8	7	CH_aly_3	6	31	0.00000257035
Arabidopsis lyrata	scaffold_8	10	CH_aly_2	12	243	0.00000000388314
Capsella rubella	scaffold_4	1	CH_cru_35	8	19	0.0000000000270153
Capsella rubella	scaffold_5	1	CH_cru_7	13	27	1.88861e-21
Capsella rubella	scaffold_7	1	CH_cru_136	4	5	0.0000169978
Capsella rubella	scaffold_8	1	CH_cru_4	18	56	3.61622e-27
Capsella rubella	scaffold_5	4	CH_cru_6	13	27	1.88861e-21
Capsella rubella	scaffold_8	4	CH_cru_4	18	56	3.61622e-27
Carica papaya	supercontig_2	1	CH_cpa_57	3	3	0.00000169659
Glycine max	Gm02	1	CH_gma_103	5	5	0.0000000330258
Glycine max	Gm06	1	CH_gma_17	17	80	7.81216e-21
Glycine max	Gm08	1	CH_gma_193	4	4	0.00000924909
Glycine max	Gm16	1	CH_gma_101	7	20	0.000000030869
Glycine max	Gm16	1	CH_gma_29	10	19	0.00000000000000159164
Glycine max	Gm06	4	CH_gma_11	21	94	4.23855e-27
Glycine max	Gm16	4	CH_gma_19	10	19	0.00000000000000159164
Glycine max	Gm16	5	CH_gma_40	21	237	0.0000000098386
Gossypium raimondii	Chr05	1	CH_gra_203	3	4	0.00011203
Gossypium raimondii	Chr11	1	CH_gra_77	6	19	0.000000000427678
Populus trichocarpa	Chr05	1	CH_ptr_113	6	7	0.00000000152832
Populus trichocarpa	Chr11	1	CH_ptr_13	20	70	6.58534e-27
Populus trichocarpa	Chr13	1	CH_ptr_43	11	22	1.63618e-16
Populus trichocarpa	Chr14	1	CH_ptr_89	8	17	0.0000000000865165
Populus trichocarpa	Chr17	1	CH_ptr_31	13	27	7.26172e-20
Populus trichocarpa	Chr19	1	CH_ptr_47	11	26	0.00000000000000176579
Populus trichocarpa	scaffold_38	1	CH_ptr_48	11	26	0.00000000000000176579
Populus trichocarpa	scaffold_73	1	CH_ptr_225	6	21	0.0000112728
Populus trichocarpa	Chr05	2	CH_ptr_181	9	26	0.000000408911
Populus trichocarpa	Chr11	4	CH_ptr_12	20	70	6.58534e-27
Populus trichocarpa	Chr13	4	CH_ptr_34	11	22	1.63618e-16
Populus trichocarpa	Chr17	4	CH_ptr_28	13	27	7.26172e-20
Populus trichocarpa	Chr19	4	CH_ptr_37	11	26	0.00000000000000176579
Populus trichocarpa	scaffold_38	4	CH_ptr_38	11	26	0.00000000000000176579
Prunus persica	scaffold_1	1	CH_ppe_86	12	69	0.00000000039249
Prunus persica	scaffold_6	1	CH_ppe_243	4	4	0.0000395688
Prunus persica	scaffold_7	1	CH_ppe_56	10	24	0.00000000000324606
Prunus persica	scaffold_8	1	CH_ppe_127	9	39	0.0000000548153
Prunus persica	scaffold_8	1	CH_ppe_65	11	40	0.000000000020615
Prunus persica	scaffold_8	1	CH_ppe_32	15	58	2.6934e-16
Prunus persica	scaffold_1	4	CH_ppe_42	16	133	0.00000000000616425
Prunus persica	scaffold_8	4	CH_ppe_90	14	274	0.0000544259
Prunus persica	scaffold_8	4	CH_ppe_22	19	126	1.01659e-16
Ricinus communis	29910	1	CH_rco_83	6	28	0.000000392465
Ricinus communis	29910	5	CH_rco_21	11	50	0.0000000161625

Available child term results

GO term	Description	Number of clusters
GO:0002752	cell surface pattern recognition receptor signaling pathway	8
GO:0009616	virus induced gene silencing	5
GO:0009626	plant-type hypersensitive response	18
GO:0009814	defense response, incompatible interaction	3
GO:0009816	defense response to bacterium, incompatible interaction	20
GO:0009817	defense response to fungus, incompatible interaction	5
GO:0009818	defense response to protozoan, incompatible interaction	1
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	8
GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	1
GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	1
GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2
GO:0010113	negative regulation of systemic acquired resistance	1
GO:0010204	defense response signaling pathway, resistance gene-independent	2
GO:0034052	positive regulation of plant-type hypersensitive response	2
GO:0052033	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	10

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V