PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0044723
Description: single-organism carbohydrate metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_8	6	CH_egr_300	11	68	0.000287725
Lotus japonicus	chr1	4	CH_lja_9	10	106	0.0000149161
Ostreococcus lucimarinus	Chr_1	1	CH_olu_10	6	13	0.0000304121
Ostreococcus lucimarinus	Chr_1	2	CH_olu_32	6	13	0.000303229
Ostreococcus lucimarinus	Chr_1	3	CH_olu_33	6	13	0.000445401
Solanum tuberosum	chr12	3	CH_stu_483	11	52	0.0000140523
Solanum tuberosum	chr12	6	CH_stu_172	11	52	0.0000140523
Solanum tuberosum	chr07	12	CH_stu_9	19	315	0.000735135

Available child term results

GO term	Description	Number of clusters
GO:0000024	maltose biosynthetic process	2
GO:0000025	maltose catabolic process	2
GO:0005985	sucrose metabolic process	2
GO:0005987	sucrose catabolic process	3
GO:0005992	trehalose biosynthetic process	1
GO:0005993	trehalose catabolic process	2
GO:0005997	xylulose metabolic process	2
GO:0006006	glucose metabolic process	3
GO:0006013	mannose metabolic process	24
GO:0006075	(1->3)-beta-D-glucan biosynthetic process	36
GO:0006096	glycolysis	6
GO:0006097	glyoxylate cycle	3
GO:0006110	regulation of glycolysis	2
GO:0006471	protein ADP-ribosylation	9
GO:0006486	protein glycosylation	5
GO:0009051	pentose-phosphate shunt, oxidative branch	2
GO:0009052	pentose-phosphate shunt, non-oxidative branch	3
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009250	glucan biosynthetic process	6
GO:0010246	rhamnogalacturonan I biosynthetic process	4
GO:0010439	regulation of glucosinolate biosynthetic process	2
GO:0018279	protein N-linked glycosylation via asparagine	2
GO:0019307	mannose biosynthetic process	5
GO:0019310	inositol catabolic process	8
GO:0019318	hexose metabolic process	5
GO:0019593	mannitol biosynthetic process	2
GO:0030244	cellulose biosynthetic process	2
GO:0030259	lipid glycosylation	4
GO:0031222	arabinan catabolic process	4
GO:0032951	regulation of beta-glucan biosynthetic process	6
GO:0032953	regulation of (1->3)-beta-D-glucan biosynthetic process	2
GO:0033692	cellular polysaccharide biosynthetic process	1
GO:0035884	arabinan biosynthetic process	2
GO:0042732	D-xylose metabolic process	8
GO:0045226	extracellular polysaccharide biosynthetic process	2
GO:0046373	L-arabinose metabolic process	34
GO:0048358	mucilage pectin biosynthetic process	2
GO:0051274	beta-glucan biosynthetic process	2
GO:0052746	inositol phosphorylation	4
GO:2000082	regulation of L-ascorbic acid biosynthetic process	2
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	40

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V