PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0044712
Description: single-organism catabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	2	CH_aly_121	14	72	0.00000037973
Arabidopsis lyrata	scaffold_7	3	CH_aly_154	14	72	0.000000958889
Arabidopsis lyrata	scaffold_7	4	CH_aly_16	12	72	0.0000000387264
Arabidopsis lyrata	scaffold_7	5	CH_aly_26	14	72	0.00000037973
Arabidopsis lyrata	scaffold_7	6	CH_aly_40	14	72	0.000000958889
Arabidopsis thaliana	1	4	CH_ath_51	10	14	0.00000434363
Arabidopsis thaliana	1	5	CH_ath_67	10	14	0.00000660485
Arabidopsis thaliana	1	6	CH_ath_71	10	14	0.00000722764
Cucumis melo	CM3.5_scaffold00022	4	CH_cme_33	10	88	0.0000489863
Eucalyptus grandis	scaffold_3	5	CH_egr_282	21	285	0.000606239
Eucalyptus grandis	scaffold_3	6	CH_egr_317	22	285	0.000751589
Glycine max	Gm01	6	CH_gma_79	17	134	0.0000215771
Thellungiella parvula	ch4-6	3	CH_tpa_174	7	16	0.000217958

Available child term results

GO term	Description	Number of clusters
GO:0000025	maltose catabolic process	2
GO:0000045	autophagic vacuole assembly	2
GO:0001561	fatty acid alpha-oxidation	13
GO:0005987	sucrose catabolic process	3
GO:0005993	trehalose catabolic process	2
GO:0006096	glycolysis	6
GO:0006110	regulation of glycolysis	2
GO:0006145	purine nucleobase catabolic process	4
GO:0006148	inosine catabolic process	2
GO:0006154	adenosine catabolic process	18
GO:0006184	GTP catabolic process	6
GO:0006200	ATP catabolic process	7
GO:0006208	pyrimidine nucleobase catabolic process	2
GO:0006527	arginine catabolic process	1
GO:0006540	glutamate decarboxylation to succinate	2
GO:0006552	leucine catabolic process	1
GO:0006559	L-phenylalanine catabolic process	26
GO:0006562	proline catabolic process	3
GO:0006567	threonine catabolic process	2
GO:0006569	tryptophan catabolic process	20
GO:0006572	tyrosine catabolic process	4
GO:0006574	valine catabolic process	3
GO:0006635	fatty acid beta-oxidation	3
GO:0009051	pentose-phosphate shunt, oxidative branch	2
GO:0009052	pentose-phosphate shunt, non-oxidative branch	3
GO:0009166	nucleotide catabolic process	1
GO:0009407	toxin catabolic process	49
GO:0009972	cytidine deamination	15
GO:0015996	chlorophyll catabolic process	10
GO:0016042	lipid catabolic process	7
GO:0016103	diterpenoid catabolic process	4
GO:0016121	carotene catabolic process	1
GO:0016124	xanthophyll catabolic process	16
GO:0016127	sterol catabolic process	51
GO:0019310	inositol catabolic process	8
GO:0019447	D-cysteine catabolic process	1
GO:0019450	L-cysteine catabolic process to pyruvate	6
GO:0019464	glycine decarboxylation via glycine cleavage system	3
GO:0019500	cyanide catabolic process	2
GO:0019762	glucosinolate catabolic process	1
GO:0030328	prenylcysteine catabolic process	4
GO:0031222	arabinan catabolic process	4
GO:0032312	regulation of ARF GTPase activity	3
GO:0032313	regulation of Rab GTPase activity	3
GO:0034263	autophagy in response to ER overload	1
GO:0043419	urea catabolic process	4
GO:0044242	cellular lipid catabolic process	1
GO:0044282	small molecule catabolic process	2
GO:0046274	lignin catabolic process	20
GO:0046340	diacylglycerol catabolic process	6
GO:0046345	abscisic acid catabolic process	28
GO:0046466	membrane lipid catabolic process	8
GO:0046477	glycosylceramide catabolic process	3
GO:0050994	regulation of lipid catabolic process	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V