Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0044422
- Description
- organelle part
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00002 | 3 | CH_atr_368 | 24 | 70 | 0.000887266 |
Arabidopsis thaliana | 2 | 1 | CH_ath_196 | 25 | 52 | 0.0000146422 |
Arabidopsis thaliana | 2 | 2 | CH_ath_331 | 29 | 66 | 0.000178863 |
Arabidopsis thaliana | 2 | 3 | CH_ath_355 | 29 | 66 | 0.000231912 |
Arabidopsis thaliana | 2 | 7 | CH_ath_18 | 25 | 52 | 0.00000316241 |
Arabidopsis thaliana | 2 | 8 | CH_ath_19 | 25 | 52 | 0.0000174954 |
Arabidopsis thaliana | 2 | 9 | CH_ath_20 | 25 | 52 | 0.0000218614 |
Arabidopsis thaliana | 2 | 12 | CH_ath_29 | 25 | 52 | 0.0000218614 |
Citrullus lanatus | Chr7 | 3 | CH_cla_312 | 27 | 76 | 0.000830025 |
Citrullus lanatus | Chr7 | 6 | CH_cla_62 | 29 | 84 | 0.000547916 |
Thellungiella parvula | ch5-1 | 6 | CH_tpa_27 | 70 | 262 | 0.0000496436 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000124 | SAGA complex | 5 |
GO:0000139 | Golgi membrane | 3 |
GO:0000221 | vacuolar proton-transporting V-type ATPase, V1 domain | 3 |
GO:0000228 | nuclear chromosome | 2 |
GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 8 |
GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 11 |
GO:0000311 | plastid large ribosomal subunit | 4 |
GO:0000315 | organellar large ribosomal subunit | 1 |
GO:0000418 | DNA-directed RNA polymerase IV complex | 2 |
GO:0000419 | DNA-directed RNA polymerase V complex | 2 |
GO:0000439 | core TFIIH complex | 3 |
GO:0000445 | THO complex part of transcription export complex | 3 |
GO:0000775 | chromosome, centromeric region | 2 |
GO:0000776 | kinetochore | 1 |
GO:0000779 | condensed chromosome, centromeric region | 1 |
GO:0000784 | nuclear chromosome, telomeric region | 4 |
GO:0000785 | chromatin | 6 |
GO:0000786 | nucleosome | 102 |
GO:0000795 | synaptonemal complex | 4 |
GO:0000796 | condensin complex | 20 |
GO:0000811 | GINS complex | 1 |
GO:0000813 | ESCRT I complex | 2 |
GO:0000922 | spindle pole | 6 |
GO:0000930 | gamma-tubulin complex | 2 |
GO:0005643 | nuclear pore | 21 |
GO:0005652 | nuclear lamina | 2 |
GO:0005654 | nucleoplasm | 1 |
GO:0005657 | replication fork | 2 |
GO:0005662 | DNA replication factor A complex | 2 |
GO:0005664 | nuclear origin of replication recognition complex | 11 |
GO:0005665 | DNA-directed RNA polymerase II, core complex | 1 |
GO:0005669 | transcription factor TFIID complex | 2 |
GO:0005672 | transcription factor TFIIA complex | 9 |
GO:0005673 | transcription factor TFIIE complex | 3 |
GO:0005674 | transcription factor TFIIF complex | 10 |
GO:0005680 | anaphase-promoting complex | 11 |
GO:0005681 | spliceosomal complex | 7 |
GO:0005720 | nuclear heterochromatin | 2 |
GO:0005740 | mitochondrial envelope | 1 |
GO:0005741 | mitochondrial outer membrane | 2 |
GO:0005743 | mitochondrial inner membrane | 4 |
GO:0005744 | mitochondrial inner membrane presequence translocase complex | 12 |
GO:0005746 | mitochondrial respiratory chain | 9 |
GO:0005759 | mitochondrial matrix | 15 |
GO:0005774 | vacuolar membrane | 13 |
GO:0005775 | vacuolar lumen | 6 |
GO:0005778 | peroxisomal membrane | 6 |
GO:0005779 | integral to peroxisomal membrane | 5 |
GO:0005787 | signal peptidase complex | 3 |
GO:0005788 | endoplasmic reticulum lumen | 2 |
GO:0005795 | Golgi stack | 11 |
GO:0005797 | Golgi medial cisterna | 2 |
GO:0005815 | microtubule organizing center | 3 |
GO:0005819 | spindle | 3 |
GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | 18 |
GO:0005849 | mRNA cleavage factor complex | 2 |
GO:0005871 | kinesin complex | 19 |
GO:0005874 | microtubule | 2 |
GO:0005884 | actin filament | 5 |
GO:0008180 | COP9 signalosome | 1 |
GO:0008250 | oligosaccharyltransferase complex | 2 |
GO:0008290 | F-actin capping protein complex | 4 |
GO:0009535 | chloroplast thylakoid membrane | 54 |
GO:0009543 | chloroplast thylakoid lumen | 1 |
GO:0009569 | chloroplast starch grain | 2 |
GO:0009573 | chloroplast ribulose bisphosphate carboxylase complex | 4 |
GO:0009705 | plant-type vacuole membrane | 7 |
GO:0009706 | chloroplast inner membrane | 2 |
GO:0009707 | chloroplast outer membrane | 1 |
GO:0009941 | chloroplast envelope | 8 |
GO:0010287 | plastoglobule | 7 |
GO:0010370 | perinucleolar chromocenter | 4 |
GO:0012507 | ER to Golgi transport vesicle membrane | 1 |
GO:0015934 | large ribosomal subunit | 5 |
GO:0015935 | small ribosomal subunit | 6 |
GO:0016363 | nuclear matrix | 5 |
GO:0016459 | myosin complex | 16 |
GO:0016471 | vacuolar proton-transporting V-type ATPase complex | 6 |
GO:0016591 | DNA-directed RNA polymerase II, holoenzyme | 3 |
GO:0016592 | mediator complex | 2 |
GO:0016602 | CCAAT-binding factor complex | 19 |
GO:0016604 | nuclear body | 4 |
GO:0017053 | transcriptional repressor complex | 8 |
GO:0017119 | Golgi transport complex | 2 |
GO:0022627 | cytosolic small ribosomal subunit | 11 |
GO:0030077 | plasma membrane light-harvesting complex | 2 |
GO:0030095 | chloroplast photosystem II | 1 |
GO:0030126 | COPI vesicle coat | 11 |
GO:0030127 | COPII vesicle coat | 2 |
GO:0030130 | clathrin coat of trans-Golgi network vesicle | 1 |
GO:0030173 | integral to Golgi membrane | 12 |
GO:0030659 | cytoplasmic vesicle membrane | 2 |
GO:0030665 | clathrin-coated vesicle membrane | 2 |
GO:0030870 | Mre11 complex | 6 |
GO:0030896 | checkpoint clamp complex | 3 |
GO:0030915 | Smc5-Smc6 complex | 7 |
GO:0030981 | cortical microtubule cytoskeleton | 8 |
GO:0031011 | Ino80 complex | 11 |
GO:0031090 | organelle membrane | 5 |
GO:0031227 | intrinsic to endoplasmic reticulum membrane | 5 |
GO:0031261 | DNA replication preinitiation complex | 3 |
GO:0031305 | integral to mitochondrial inner membrane | 1 |
GO:0031307 | integral to mitochondrial outer membrane | 1 |
GO:0031314 | extrinsic to mitochondrial inner membrane | 20 |
GO:0031357 | integral to chloroplast inner membrane | 4 |
GO:0031519 | PcG protein complex | 7 |
GO:0031897 | Tic complex | 2 |
GO:0031965 | nuclear membrane | 1 |
GO:0031966 | mitochondrial membrane | 3 |
GO:0031967 | organelle envelope | 1 |
GO:0031968 | organelle outer membrane | 1 |
GO:0031969 | chloroplast membrane | 4 |
GO:0031981 | nuclear lumen | 1 |
GO:0032039 | integrator complex | 4 |
GO:0032389 | MutLalpha complex | 9 |
GO:0032777 | Piccolo NuA4 histone acetyltransferase complex | 9 |
GO:0032783 | ELL-EAF complex | 3 |
GO:0033557 | Slx1-Slx4 complex | 1 |
GO:0033597 | mitotic checkpoint complex | 7 |
GO:0034399 | nuclear periphery | 2 |
GO:0035085 | cilium axoneme | 3 |
GO:0035101 | FACT complex | 26 |
GO:0042406 | extrinsic to endoplasmic reticulum membrane | 1 |
GO:0042765 | GPI-anchor transamidase complex | 2 |
GO:0043189 | H4/H2A histone acetyltransferase complex | 3 |
GO:0043564 | Ku70:Ku80 complex | 8 |
GO:0043596 | nuclear replication fork | 4 |
GO:0043601 | nuclear replisome | 1 |
GO:0044391 | ribosomal subunit | 13 |
GO:0044427 | chromosomal part | 23 |
GO:0044428 | nuclear part | 1 |
GO:0044429 | mitochondrial part | 78 |
GO:0044431 | Golgi apparatus part | 3 |
GO:0044434 | chloroplast part | 41 |
GO:0044435 | plastid part | 82 |
GO:0044446 | intracellular organelle part | 34 |
GO:0044451 | nucleoplasm part | 1 |
GO:0046540 | U4/U6 x U5 tri-snRNP complex | 5 |
GO:0048188 | Set1C/COMPASS complex | 2 |
GO:0070461 | SAGA-type complex | 5 |
GO:0070531 | BRCA1-A complex | 7 |
GO:0070652 | HAUS complex | 13 |
GO:0071458 | integral to cytosolic side of endoplasmic reticulum membrane | 2 |
GO:0072546 | ER membrane protein complex | 17 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |