Functional clusters   top

Information

Type
GO term
Identifier
GO:0044422
Description
organelle part

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodascaffold000023CH_atr_36824700.000887266
Arabidopsis thaliana21CH_ath_19625520.0000146422
Arabidopsis thaliana22CH_ath_33129660.000178863
Arabidopsis thaliana23CH_ath_35529660.000231912
Arabidopsis thaliana27CH_ath_1825520.00000316241
Arabidopsis thaliana28CH_ath_1925520.0000174954
Arabidopsis thaliana29CH_ath_2025520.0000218614
Arabidopsis thaliana212CH_ath_2925520.0000218614
Citrullus lanatusChr73CH_cla_31227760.000830025
Citrullus lanatusChr76CH_cla_6229840.000547916
Thellungiella parvulach5-16CH_tpa_27702620.0000496436

Available child term results

GO term Description Number of clusters
GO:0000124SAGA complex5
GO:0000139Golgi membrane3
GO:0000221vacuolar proton-transporting V-type ATPase, V1 domain3
GO:0000228nuclear chromosome2
GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)8
GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)11
GO:0000311plastid large ribosomal subunit4
GO:0000315organellar large ribosomal subunit1
GO:0000418DNA-directed RNA polymerase IV complex2
GO:0000419DNA-directed RNA polymerase V complex2
GO:0000439core TFIIH complex3
GO:0000445THO complex part of transcription export complex3
GO:0000775chromosome, centromeric region2
GO:0000776kinetochore1
GO:0000779condensed chromosome, centromeric region1
GO:0000784nuclear chromosome, telomeric region4
GO:0000785chromatin6
GO:0000786nucleosome102
GO:0000795synaptonemal complex4
GO:0000796condensin complex20
GO:0000811GINS complex1
GO:0000813ESCRT I complex2
GO:0000922spindle pole6
GO:0000930gamma-tubulin complex2
GO:0005643nuclear pore21
GO:0005652nuclear lamina2
GO:0005654nucleoplasm1
GO:0005657replication fork2
GO:0005662DNA replication factor A complex2
GO:0005664nuclear origin of replication recognition complex11
GO:0005665DNA-directed RNA polymerase II, core complex1
GO:0005669transcription factor TFIID complex2
GO:0005672transcription factor TFIIA complex9
GO:0005673transcription factor TFIIE complex3
GO:0005674transcription factor TFIIF complex10
GO:0005680anaphase-promoting complex11
GO:0005681spliceosomal complex7
GO:0005720nuclear heterochromatin2
GO:0005740mitochondrial envelope1
GO:0005741mitochondrial outer membrane2
GO:0005743mitochondrial inner membrane4
GO:0005744mitochondrial inner membrane presequence translocase complex12
GO:0005746mitochondrial respiratory chain9
GO:0005759mitochondrial matrix15
GO:0005774vacuolar membrane13
GO:0005775vacuolar lumen6
GO:0005778peroxisomal membrane6
GO:0005779integral to peroxisomal membrane5
GO:0005787signal peptidase complex3
GO:0005788endoplasmic reticulum lumen2
GO:0005795Golgi stack11
GO:0005797Golgi medial cisterna2
GO:0005815microtubule organizing center3
GO:0005819spindle3
GO:0005847mRNA cleavage and polyadenylation specificity factor complex18
GO:0005849mRNA cleavage factor complex2
GO:0005871kinesin complex19
GO:0005874microtubule2
GO:0005884actin filament5
GO:0008180COP9 signalosome1
GO:0008250oligosaccharyltransferase complex2
GO:0008290F-actin capping protein complex4
GO:0009535chloroplast thylakoid membrane54
GO:0009543chloroplast thylakoid lumen1
GO:0009569chloroplast starch grain2
GO:0009573chloroplast ribulose bisphosphate carboxylase complex4
GO:0009705plant-type vacuole membrane7
GO:0009706chloroplast inner membrane2
GO:0009707chloroplast outer membrane1
GO:0009941chloroplast envelope8
GO:0010287plastoglobule7
GO:0010370perinucleolar chromocenter4
GO:0012507ER to Golgi transport vesicle membrane1
GO:0015934large ribosomal subunit5
GO:0015935small ribosomal subunit6
GO:0016363nuclear matrix5
GO:0016459myosin complex16
GO:0016471vacuolar proton-transporting V-type ATPase complex6
GO:0016591DNA-directed RNA polymerase II, holoenzyme3
GO:0016592mediator complex2
GO:0016602CCAAT-binding factor complex19
GO:0016604nuclear body4
GO:0017053transcriptional repressor complex8
GO:0017119Golgi transport complex2
GO:0022627cytosolic small ribosomal subunit11
GO:0030077plasma membrane light-harvesting complex2
GO:0030095chloroplast photosystem II1
GO:0030126COPI vesicle coat11
GO:0030127COPII vesicle coat2
GO:0030130clathrin coat of trans-Golgi network vesicle1
GO:0030173integral to Golgi membrane12
GO:0030659cytoplasmic vesicle membrane2
GO:0030665clathrin-coated vesicle membrane2
GO:0030870Mre11 complex6
GO:0030896checkpoint clamp complex3
GO:0030915Smc5-Smc6 complex7
GO:0030981cortical microtubule cytoskeleton8
GO:0031011Ino80 complex11
GO:0031090organelle membrane5
GO:0031227intrinsic to endoplasmic reticulum membrane5
GO:0031261DNA replication preinitiation complex3
GO:0031305integral to mitochondrial inner membrane1
GO:0031307integral to mitochondrial outer membrane1
GO:0031314extrinsic to mitochondrial inner membrane20
GO:0031357integral to chloroplast inner membrane4
GO:0031519PcG protein complex7
GO:0031897Tic complex2
GO:0031965nuclear membrane1
GO:0031966mitochondrial membrane3
GO:0031967organelle envelope1
GO:0031968organelle outer membrane1
GO:0031969chloroplast membrane4
GO:0031981nuclear lumen1
GO:0032039integrator complex4
GO:0032389MutLalpha complex9
GO:0032777Piccolo NuA4 histone acetyltransferase complex9
GO:0032783ELL-EAF complex3
GO:0033557Slx1-Slx4 complex1
GO:0033597mitotic checkpoint complex7
GO:0034399nuclear periphery2
GO:0035085cilium axoneme3
GO:0035101FACT complex26
GO:0042406extrinsic to endoplasmic reticulum membrane1
GO:0042765GPI-anchor transamidase complex2
GO:0043189H4/H2A histone acetyltransferase complex3
GO:0043564Ku70:Ku80 complex8
GO:0043596nuclear replication fork4
GO:0043601nuclear replisome1
GO:0044391ribosomal subunit13
GO:0044427chromosomal part23
GO:0044428nuclear part1
GO:0044429mitochondrial part78
GO:0044431Golgi apparatus part3
GO:0044434chloroplast part41
GO:0044435plastid part82
GO:0044446intracellular organelle part34
GO:0044451nucleoplasm part1
GO:0046540U4/U6 x U5 tri-snRNP complex5
GO:0048188Set1C/COMPASS complex2
GO:0070461SAGA-type complex5
GO:0070531BRCA1-A complex7
GO:0070652HAUS complex13
GO:0071458integral to cytosolic side of endoplasmic reticulum membrane2
GO:0072546ER membrane protein complex17

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V