Functional clusters   top

Information

Type
GO term
Identifier
GO:0044267
Description
cellular protein metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Eucalyptus grandisscaffold_42CH_egr_60917340.0000639332
Eucalyptus grandisscaffold_43CH_egr_82917340.000423136
Eucalyptus grandisscaffold_45CH_egr_24817340.0000639332
Eucalyptus grandisscaffold_46CH_egr_30417340.000423136
Glycine maxGm035CH_gma_78492310.000213688
Glycine maxGm036CH_gma_95532310.000145294
Manihot esculentascaffold120041CH_mes_63990.00000163552
Manihot esculentascaffold120042CH_mes_83990.00000572806
Manihot esculentascaffold120043CH_mes_134990.0000172834
Medicago truncatulachr13CH_mtr_38217400.000000645291
Medicago truncatulachr53CH_mtr_34512170.000000236929
Medicago truncatulachr16CH_mtr_14017400.000000645291
Medicago truncatulachr56CH_mtr_13412170.000000236929
Medicago truncatulachr86CH_mtr_223442970.000168446
Populus trichocarpaChr074CH_ptr_102301180.000150196
Solanum lycopersicumch061CH_sly_39318570.000498663
Solanum lycopersicumch062CH_sly_44719570.000526185
Solanum lycopersicumch063CH_sly_64820570.000973178
Solanum lycopersicumch064CH_sly_10818570.000498663
Solanum lycopersicumch065CH_sly_11919570.000526185
Vitis viniferachrUn1CH_vvi_26912250.000402619
Vitis viniferachrUn4CH_vvi_9912250.000402619

Available child term results

GO term Description Number of clusters
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity6
GO:0006412translation6
GO:0006413translational initiation3
GO:0006414translational elongation11
GO:0006418tRNA aminoacylation for protein translation4
GO:0006419alanyl-tRNA aminoacylation9
GO:0006420arginyl-tRNA aminoacylation11
GO:0006421asparaginyl-tRNA aminoacylation6
GO:0006423cysteinyl-tRNA aminoacylation12
GO:0006426glycyl-tRNA aminoacylation15
GO:0006428isoleucyl-tRNA aminoacylation5
GO:0006429leucyl-tRNA aminoacylation8
GO:0006430lysyl-tRNA aminoacylation11
GO:0006431methionyl-tRNA aminoacylation4
GO:0006432phenylalanyl-tRNA aminoacylation2
GO:0006433prolyl-tRNA aminoacylation7
GO:0006434seryl-tRNA aminoacylation16
GO:0006435threonyl-tRNA aminoacylation5
GO:0006436tryptophanyl-tRNA aminoacylation6
GO:0006438valyl-tRNA aminoacylation29
GO:0006450regulation of translational fidelity4
GO:0006457protein folding11
GO:0006464cellular protein modification process69
GO:0006465signal peptide processing3
GO:0006468protein phosphorylation374
GO:0006470protein dephosphorylation3
GO:0006471protein ADP-ribosylation9
GO:0006486protein glycosylation5
GO:0006499N-terminal protein myristoylation4
GO:0006511ubiquitin-dependent protein catabolic process84
GO:0006515misfolded or incompletely synthesized protein catabolic process5
GO:0006517protein deglycosylation14
GO:0006627protein processing involved in protein targeting to mitochondrion3
GO:0008213protein alkylation1
GO:0008612peptidyl-lysine modification to hypusine3
GO:0010452histone H3-K36 methylation2
GO:0010731protein glutathionylation16
GO:0016255attachment of GPI anchor to protein38
GO:0016567protein ubiquitination32
GO:0016572histone phosphorylation3
GO:0016575histone deacetylation1
GO:0016579protein deubiquitination1
GO:0016598protein arginylation3
GO:0017148negative regulation of translation1
GO:0017182peptidyl-diphthamide metabolic process3
GO:0017186peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase2
GO:0018023peptidyl-lysine trimethylation3
GO:0018149peptide cross-linking25
GO:0018279protein N-linked glycosylation via asparagine2
GO:0018282metal incorporation into metallo-sulfur cluster2
GO:0018298protein-chromophore linkage5
GO:0018343protein farnesylation6
GO:0031145anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process8
GO:0031365N-terminal protein amino acid modification6
GO:0034968histone lysine methylation1
GO:0034975protein folding in endoplasmic reticulum8
GO:0035067negative regulation of histone acetylation8
GO:0035278negative regulation of translation involved in gene silencing by miRNA18
GO:0035335peptidyl-tyrosine dephosphorylation2
GO:0042026protein refolding5
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process3
GO:0043335protein unfolding2
GO:0043967histone H4 acetylation6
GO:0043968histone H2A acetylation4
GO:0044257cellular protein catabolic process35
GO:0045116protein neddylation4
GO:0045900negative regulation of translational elongation3
GO:0045901positive regulation of translational elongation3
GO:0051085chaperone mediated protein folding requiring cofactor2
GO:0051444negative regulation of ubiquitin-protein ligase activity4
GO:0051603proteolysis involved in cellular protein catabolic process6
GO:0061077chaperone-mediated protein folding2
GO:0070647protein modification by small protein conjugation or removal1
GO:0070734histone H3-K27 methylation4
GO:0070932histone H3 deacetylation1
GO:0071586CAAX-box protein processing3
GO:0071900regulation of protein serine/threonine kinase activity2
GO:0090042tubulin deacetylation2

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V