Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0044267
- Description
- cellular protein metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_4 | 2 | CH_egr_609 | 17 | 34 | 0.0000639332 |
Eucalyptus grandis | scaffold_4 | 3 | CH_egr_829 | 17 | 34 | 0.000423136 |
Eucalyptus grandis | scaffold_4 | 5 | CH_egr_248 | 17 | 34 | 0.0000639332 |
Eucalyptus grandis | scaffold_4 | 6 | CH_egr_304 | 17 | 34 | 0.000423136 |
Glycine max | Gm03 | 5 | CH_gma_78 | 49 | 231 | 0.000213688 |
Glycine max | Gm03 | 6 | CH_gma_95 | 53 | 231 | 0.000145294 |
Manihot esculenta | scaffold12004 | 1 | CH_mes_63 | 9 | 9 | 0.00000163552 |
Manihot esculenta | scaffold12004 | 2 | CH_mes_83 | 9 | 9 | 0.00000572806 |
Manihot esculenta | scaffold12004 | 3 | CH_mes_134 | 9 | 9 | 0.0000172834 |
Medicago truncatula | chr1 | 3 | CH_mtr_382 | 17 | 40 | 0.000000645291 |
Medicago truncatula | chr5 | 3 | CH_mtr_345 | 12 | 17 | 0.000000236929 |
Medicago truncatula | chr1 | 6 | CH_mtr_140 | 17 | 40 | 0.000000645291 |
Medicago truncatula | chr5 | 6 | CH_mtr_134 | 12 | 17 | 0.000000236929 |
Medicago truncatula | chr8 | 6 | CH_mtr_223 | 44 | 297 | 0.000168446 |
Populus trichocarpa | Chr07 | 4 | CH_ptr_102 | 30 | 118 | 0.000150196 |
Solanum lycopersicum | ch06 | 1 | CH_sly_393 | 18 | 57 | 0.000498663 |
Solanum lycopersicum | ch06 | 2 | CH_sly_447 | 19 | 57 | 0.000526185 |
Solanum lycopersicum | ch06 | 3 | CH_sly_648 | 20 | 57 | 0.000973178 |
Solanum lycopersicum | ch06 | 4 | CH_sly_108 | 18 | 57 | 0.000498663 |
Solanum lycopersicum | ch06 | 5 | CH_sly_119 | 19 | 57 | 0.000526185 |
Vitis vinifera | chrUn | 1 | CH_vvi_269 | 12 | 25 | 0.000402619 |
Vitis vinifera | chrUn | 4 | CH_vvi_99 | 12 | 25 | 0.000402619 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | 6 |
GO:0006412 | translation | 6 |
GO:0006413 | translational initiation | 3 |
GO:0006414 | translational elongation | 11 |
GO:0006418 | tRNA aminoacylation for protein translation | 4 |
GO:0006419 | alanyl-tRNA aminoacylation | 9 |
GO:0006420 | arginyl-tRNA aminoacylation | 11 |
GO:0006421 | asparaginyl-tRNA aminoacylation | 6 |
GO:0006423 | cysteinyl-tRNA aminoacylation | 12 |
GO:0006426 | glycyl-tRNA aminoacylation | 15 |
GO:0006428 | isoleucyl-tRNA aminoacylation | 5 |
GO:0006429 | leucyl-tRNA aminoacylation | 8 |
GO:0006430 | lysyl-tRNA aminoacylation | 11 |
GO:0006431 | methionyl-tRNA aminoacylation | 4 |
GO:0006432 | phenylalanyl-tRNA aminoacylation | 2 |
GO:0006433 | prolyl-tRNA aminoacylation | 7 |
GO:0006434 | seryl-tRNA aminoacylation | 16 |
GO:0006435 | threonyl-tRNA aminoacylation | 5 |
GO:0006436 | tryptophanyl-tRNA aminoacylation | 6 |
GO:0006438 | valyl-tRNA aminoacylation | 29 |
GO:0006450 | regulation of translational fidelity | 4 |
GO:0006457 | protein folding | 11 |
GO:0006464 | cellular protein modification process | 69 |
GO:0006465 | signal peptide processing | 3 |
GO:0006468 | protein phosphorylation | 374 |
GO:0006470 | protein dephosphorylation | 3 |
GO:0006471 | protein ADP-ribosylation | 9 |
GO:0006486 | protein glycosylation | 5 |
GO:0006499 | N-terminal protein myristoylation | 4 |
GO:0006511 | ubiquitin-dependent protein catabolic process | 84 |
GO:0006515 | misfolded or incompletely synthesized protein catabolic process | 5 |
GO:0006517 | protein deglycosylation | 14 |
GO:0006627 | protein processing involved in protein targeting to mitochondrion | 3 |
GO:0008213 | protein alkylation | 1 |
GO:0008612 | peptidyl-lysine modification to hypusine | 3 |
GO:0010452 | histone H3-K36 methylation | 2 |
GO:0010731 | protein glutathionylation | 16 |
GO:0016255 | attachment of GPI anchor to protein | 38 |
GO:0016567 | protein ubiquitination | 32 |
GO:0016572 | histone phosphorylation | 3 |
GO:0016575 | histone deacetylation | 1 |
GO:0016579 | protein deubiquitination | 1 |
GO:0016598 | protein arginylation | 3 |
GO:0017148 | negative regulation of translation | 1 |
GO:0017182 | peptidyl-diphthamide metabolic process | 3 |
GO:0017186 | peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | 2 |
GO:0018023 | peptidyl-lysine trimethylation | 3 |
GO:0018149 | peptide cross-linking | 25 |
GO:0018279 | protein N-linked glycosylation via asparagine | 2 |
GO:0018282 | metal incorporation into metallo-sulfur cluster | 2 |
GO:0018298 | protein-chromophore linkage | 5 |
GO:0018343 | protein farnesylation | 6 |
GO:0031145 | anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | 8 |
GO:0031365 | N-terminal protein amino acid modification | 6 |
GO:0034968 | histone lysine methylation | 1 |
GO:0034975 | protein folding in endoplasmic reticulum | 8 |
GO:0035067 | negative regulation of histone acetylation | 8 |
GO:0035278 | negative regulation of translation involved in gene silencing by miRNA | 18 |
GO:0035335 | peptidyl-tyrosine dephosphorylation | 2 |
GO:0042026 | protein refolding | 5 |
GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 3 |
GO:0043335 | protein unfolding | 2 |
GO:0043967 | histone H4 acetylation | 6 |
GO:0043968 | histone H2A acetylation | 4 |
GO:0044257 | cellular protein catabolic process | 35 |
GO:0045116 | protein neddylation | 4 |
GO:0045900 | negative regulation of translational elongation | 3 |
GO:0045901 | positive regulation of translational elongation | 3 |
GO:0051085 | chaperone mediated protein folding requiring cofactor | 2 |
GO:0051444 | negative regulation of ubiquitin-protein ligase activity | 4 |
GO:0051603 | proteolysis involved in cellular protein catabolic process | 6 |
GO:0061077 | chaperone-mediated protein folding | 2 |
GO:0070647 | protein modification by small protein conjugation or removal | 1 |
GO:0070734 | histone H3-K27 methylation | 4 |
GO:0070932 | histone H3 deacetylation | 1 |
GO:0071586 | CAAX-box protein processing | 3 |
GO:0071900 | regulation of protein serine/threonine kinase activity | 2 |
GO:0090042 | tubulin deacetylation | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |