Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0044265
- Description
- cellular macromolecule catabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Solanum tuberosum | chr02 | 2 | CH_stu_56 | 15 | 30 | 3.18883e-18 |
Solanum tuberosum | chr02 | 5 | CH_stu_45 | 15 | 30 | 3.18883e-18 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 1 |
GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | 6 |
GO:0006308 | DNA catabolic process | 16 |
GO:0006511 | ubiquitin-dependent protein catabolic process | 84 |
GO:0006515 | misfolded or incompletely synthesized protein catabolic process | 5 |
GO:0006516 | glycoprotein catabolic process | 2 |
GO:0016075 | rRNA catabolic process | 1 |
GO:0016598 | protein arginylation | 3 |
GO:0031145 | anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | 8 |
GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 3 |
GO:0044257 | cellular protein catabolic process | 35 |
GO:0051603 | proteolysis involved in cellular protein catabolic process | 6 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |