PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm08	1	CH_gma_273	7	29	0.000205485
Glycine max	Gm18	1	CH_gma_195	8	34	0.000011285
Glycine max	Gm18	2	CH_gma_367	8	34	0.000290361
Glycine max	Gm18	3	CH_gma_503	8	34	0.000445089
Glycine max	Gm02	5	CH_gma_70	10	54	0.0000827966
Glycine max	Gm02	6	CH_gma_94	10	54	0.00013997
Manihot esculenta	scaffold03542	6	CH_mes_21	10	53	0.000011183
Theobroma cacao	scaffold_3	4	CH_tca_28	11	35	0.0000000000239063
Theobroma cacao	scaffold_1	5	CH_tca_78	14	182	0.000352744
Theobroma cacao	scaffold_3	5	CH_tca_29	13	50	0.000000000143224
Theobroma cacao	scaffold_1	6	CH_tca_121	14	182	0.000522552
Theobroma cacao	scaffold_3	6	CH_tca_42	13	50	0.000000000214155

GO term	Description	Number of clusters
GO:0000024	maltose biosynthetic process	2
GO:0000025	maltose catabolic process	2
GO:0005985	sucrose metabolic process	2
GO:0005987	sucrose catabolic process	3
GO:0005992	trehalose biosynthetic process	1
GO:0005993	trehalose catabolic process	2
GO:0006073	cellular glucan metabolic process	2
GO:0006075	(1->3)-beta-D-glucan biosynthetic process	36
GO:0006097	glyoxylate cycle	3
GO:0006110	regulation of glycolysis	2
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009250	glucan biosynthetic process	6
GO:0010246	rhamnogalacturonan I biosynthetic process	4
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010411	xyloglucan metabolic process	8
GO:0010439	regulation of glucosinolate biosynthetic process	2
GO:0019310	inositol catabolic process	8
GO:0019593	mannitol biosynthetic process	2
GO:0030244	cellulose biosynthetic process	2
GO:0030245	cellulose catabolic process	3
GO:0032951	regulation of beta-glucan biosynthetic process	6
GO:0032953	regulation of (1->3)-beta-D-glucan biosynthetic process	2
GO:0033692	cellular polysaccharide biosynthetic process	1
GO:0044264	cellular polysaccharide metabolic process	5
GO:0045226	extracellular polysaccharide biosynthetic process	2
GO:0051274	beta-glucan biosynthetic process	2
GO:0052541	plant-type cell wall cellulose metabolic process	2
GO:0052746	inositol phosphorylation	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V