Functional clusters   top

Information

Type
GO term
Identifier
GO:0044257
Description
cellular protein catabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyratascaffold_73CH_aly_378110.000000000000113447
Arabidopsis lyratascaffold_73CH_aly_39770.000000000000205357
Arabidopsis thaliana13CH_ath_142560.000000062803
Arabidopsis thaliana53CH_ath_189590.00000130866
Beta vulgarisBvchr2.sca0013CH_bvu_272330.000185245
Capsella rubellascaffold_23CH_cru_2095100.0000136007
Capsella rubellascaffold_23CH_cru_119217.28569e-39
Capsella rubellascaffold_53CH_cru_1312132.2351e-23
Capsella rubellascaffold_73CH_cru_104680.00000000688307
Capsella rubellascaffold_26CH_cru_119217.28569e-39
Capsella rubellascaffold_56CH_cru_1212132.2351e-23
Carica papayasupercontig_33CH_cpa_242330.000260483
Citrullus lanatusChr53CH_cla_232330.000226304
Eucalyptus grandisscaffold_93CH_egr_501440.000000458661
Fragaria vescaLG73CH_fve_204450.00000620213
Medicago truncatulachr43CH_mtr_818100.00000000000000261813
Medicago truncatulachr73CH_mtr_8410280.00000000000000378285
Medicago truncatulachr46CH_mtr_123101240.0000000386223
Medicago truncatulachr76CH_mtr_6610280.00000000000000378285
Oryza sativa ssp. japonica13CH_osa_2112307.35755e-21
Oryza sativa ssp. japonica53CH_osa_226450.00000378551
Oryza sativa ssp. japonica93CH_osa_2205140.00000280407
Solanum lycopersicumch103CH_sly_170550.0000000114092
Solanum tuberosumchr023CH_stu_6610104.86589e-20
Solanum tuberosumchr063CH_stu_473440.0000109174
Solanum tuberosumchr103CH_stu_703470.000378305
Solanum tuberosumchr113CH_stu_5186250.0000306007
Solanum tuberosumchr113CH_stu_472440.0000109174
Solanum tuberosumchr123CH_stu_317550.0000000450659
Solanum tuberosumchr123CH_stu_1159130.00000000000000860253
Solanum tuberosumchr026CH_stu_6010104.86589e-20
Thellungiella parvulach7-13CH_tpa_1035130.00000425341
Vitis viniferachr153CH_vvi_226440.00000138934
Vitis viniferachr33CH_vvi_440330.00052775
Zea mays23CH_zma_1015100.000000657514

Available child term results

GO term Description Number of clusters
GO:0006511ubiquitin-dependent protein catabolic process84
GO:0006515misfolded or incompletely synthesized protein catabolic process5
GO:0016598protein arginylation3
GO:0031145anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process8
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process3
GO:0051603proteolysis involved in cellular protein catabolic process6

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V