PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0044255
Description: cellular lipid metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	4	CH_ath_52	24	125	0.00000484319
Arabidopsis thaliana	3	5	CH_ath_59	25	125	0.00000312991
Arabidopsis thaliana	5	5	CH_ath_32	10	10	0.000000000635101
Arabidopsis thaliana	3	6	CH_ath_58	26	125	0.000000564187
Arabidopsis thaliana	5	6	CH_ath_37	10	10	0.000000000657732
Beta vulgaris	Bvchr9.sca026	1	CH_bvu_190	7	25	0.000325023
Solanum lycopersicum	ch04	2	CH_sly_393	12	75	0.000300743
Solanum lycopersicum	ch06	2	CH_sly_326	12	67	0.0000786026
Solanum lycopersicum	ch06	3	CH_sly_463	12	67	0.000163145
Solanum lycopersicum	ch04	5	CH_sly_108	14	107	0.00025907
Solanum lycopersicum	ch06	5	CH_sly_73	17	128	0.00000505767
Solanum lycopersicum	ch04	6	CH_sly_134	15	107	0.0000687326
Solanum lycopersicum	ch06	6	CH_sly_93	18	128	0.00000159187
Solanum tuberosum	chr06	5	CH_stu_48	36	232	3.04852e-17
Solanum tuberosum	chr06	6	CH_stu_70	35	220	3.54651e-16

Available child term results

GO term	Description	Number of clusters
GO:0001561	fatty acid alpha-oxidation	13
GO:0006505	GPI anchor metabolic process	2
GO:0006631	fatty acid metabolic process	8
GO:0006633	fatty acid biosynthetic process	40
GO:0006635	fatty acid beta-oxidation	3
GO:0006636	unsaturated fatty acid biosynthetic process	3
GO:0006651	diacylglycerol biosynthetic process	6
GO:0006656	phosphatidylcholine biosynthetic process	4
GO:0006672	ceramide metabolic process	1
GO:0006720	isoprenoid metabolic process	8
GO:0006721	terpenoid metabolic process	5
GO:0006722	triterpenoid metabolic process	2
GO:0008299	isoprenoid biosynthetic process	11
GO:0009244	lipopolysaccharide core region biosynthetic process	3
GO:0009247	glycolipid biosynthetic process	1
GO:0010028	xanthophyll cycle	2
GO:0010241	ent-kaurene oxidation to kaurenoic acid	3
GO:0010263	tricyclic triterpenoid biosynthetic process	5
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010371	regulation of gibberellin biosynthetic process	2
GO:0010373	negative regulation of gibberellin biosynthetic process	2
GO:0010430	fatty acid omega-oxidation	4
GO:0010597	green leaf volatile biosynthetic process	32
GO:0010683	tricyclic triterpenoid metabolic process	6
GO:0010686	tetracyclic triterpenoid biosynthetic process	12
GO:0010867	positive regulation of triglyceride biosynthetic process	5
GO:0016099	monoterpenoid biosynthetic process	2
GO:0016101	diterpenoid metabolic process	3
GO:0016103	diterpenoid catabolic process	4
GO:0016114	terpenoid biosynthetic process	2
GO:0016117	carotenoid biosynthetic process	3
GO:0016121	carotene catabolic process	1
GO:0016124	xanthophyll catabolic process	16
GO:0016255	attachment of GPI anchor to protein	38
GO:0016487	farnesol metabolic process	2
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9
GO:0019370	leukotriene biosynthetic process	7
GO:0019375	galactolipid biosynthetic process	2
GO:0019408	dolichol biosynthetic process	10
GO:0019432	triglyceride biosynthetic process	2
GO:0019605	butyrate metabolic process	6
GO:0019745	pentacyclic triterpenoid biosynthetic process	8
GO:0030259	lipid glycosylation	4
GO:0030497	fatty acid elongation	4
GO:0031408	oxylipin biosynthetic process	12
GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process	6
GO:0042214	terpene metabolic process	2
GO:0043693	monoterpene biosynthetic process	2
GO:0044242	cellular lipid catabolic process	1
GO:0045337	farnesyl diphosphate biosynthetic process	6
GO:0046246	terpene biosynthetic process	4
GO:0046340	diacylglycerol catabolic process	6
GO:0046345	abscisic acid catabolic process	28
GO:0046459	short-chain fatty acid metabolic process	2
GO:0046466	membrane lipid catabolic process	8
GO:0046473	phosphatidic acid metabolic process	2
GO:0046477	glycosylceramide catabolic process	3
GO:0046488	phosphatidylinositol metabolic process	2
GO:0046854	phosphatidylinositol phosphorylation	3
GO:0046856	phosphatidylinositol dephosphorylation	4
GO:0051762	sesquiterpene biosynthetic process	2
GO:0051791	medium-chain fatty acid metabolic process	4
GO:0080003	thalianol metabolic process	16
GO:0090359	negative regulation of abscisic acid biosynthetic process	6
GO:1901601	strigolactone biosynthetic process	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V